Query= MSMg01no504_i14.b1 MSMg01no504_i14.b1 CHROMAT_FILE:
MSMg01no504_i14.b1 PHD_FILE: MSMg01no504_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:10 2005
(644 letters)
>mm_chr1_102003029_102004073
Length = 1045
Score = 932 bits (482), Expect = 0.0
Identities = 500/508 (98%), Gaps = 5/508 (0%)
Strand = Plus / Minus
Query: 138 agagagagagagagagagagagagagagagagagagagagaaacagagacagagagacag 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 agagagagagagagagagagagagagagagagagagagagaaacagagacagagagacag 964
Query: 198 agagacagagagagagagagagattctctcaatctcttgaaattcaccaacaaccagact 257
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ag----agagagagagagagagattctctcaatctcttgaaattcaccaacaaccagact 908
Query: 258 ggttagtcagtgagctctagggatcttccagtttctatgtccccagcactggttttacag 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ggttagtcagtgagctctagggatcttccagtttctatgtccccagcactggttttacag 848
Query: 318 gctcataccactatttataattgattgttttgtttttcttatgttgtttctagagaggag 377
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gctcataccactatttataactgattgttttgtttttcttatgttgtttctagagaggag 788
Query: 378 tctgagctccctggttcttacaaatcatacatttttaaaaatttaactatgtattcagaa 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tctgagctccctggttcttacaaatcatacatttttaaaaatttaactatgtattcagaa 728
Query: 438 ctgagctcctatgttcacttaaaaataaagaaggattagataatttgaagcccttcatga 497
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 727 ctgagctcctatgttcacttaaaaataaagaaggataaaataatttgaagcccttcatga 668
Query: 498 aaagatcaggacttctgccaatagccaaataatcattttactcttcttgtgtcaaag-aa 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 667 aaagatcaggacttctgccaatagccaaataatcattttactcttcttgtgtcaaagaaa 608
Query: 557 aaaatcttacactcacaaaagaatggcaacaagaaaacatcattctttgtaaatcatagg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aaaatcttacactcacaaaagaatggcaacaagaaaacatcattctttgtaaatcatagg 548
Query: 617 gattttaattaatcatcctccaaaagcc 644
||||||||||||||||||||||||||||
Sbjct: 547 gattttaattaatcatcctccaaaagcc 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 23
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space: 656190
Effective search space used: 656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_i14.g1 MSMg01no504_i14.g1 CHROMAT_FILE:
MSMg01no504_i14.g1 PHD_FILE: MSMg01no504_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:10 2005
(521 letters)
>mm_chr1_101854305_101855225
Length = 921
Score = 600 bits (310), Expect = e-175
Identities = 514/698 (73%), Gaps = 177/698 (25%)
Strand = Plus / Plus
Query: 1 actaaaatctatcgaaagatctcctagcatgacctgtaggtccccattagtacatacatg 60
||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 actaaaatctatcaaaagatcccctagcatgacctgtaggtgcccattagtacatacatg 260
Query: 61 tactaaattaaaatgaagctaaacatcaagtcactatatgaagatagaccttctgcaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactaaattaaaatgaagctaaacatcaagtcactatatgaagatagaccttctgcaagt 320
Query: 121 tcagaaatatcttattgtgacaaagaatacagtagtcagtaaccacataaatctactgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagaaatatcttattgtgacaaagaatacagtagtcagtaaccacataaatctactgag 380
Query: 181 tattgtgactggaaaatagctcatttggtaaggtgtttgctttgcaaacttaagcacata 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattgtgactgaaaaatagctcatttggtaaggtgtttgctttgcaaacttaagcacata 440
Query: 241 tatttatttcccagagctcacgttaataaaaacaacaa---------------------- 278
||||||||||||||||| |||||||| |||||||||||
Sbjct: 441 tatttatttcccagagcccacgttaaaaaaaacaacaagggctggtgagatggctcagtg 500
Query: 279 ---------------------------------------caa-------caac------- 285
||| ||||
Sbjct: 501 ggtaagagcacccgactgctcttccgaaggtccagagttcaaatcccagcaaccacatgg 560
Query: 285 ------------------------------------------------------------ 285
Sbjct: 561 tggctcacaaccatctgtaatgagatctgactccctcttctggtgtgtctgaagacagct 620
Query: 286 ------------------------------------------aaaaaacgagtatggtag 303
||||||||||||||||||
Sbjct: 621 acagtgtacttacatgtaataaataaataaatctttaaaaaaaaaaaacgagtatggtag 680
Query: 304 aacatacatataatcccagaattggagaggtgaagacaggaaaattcctagggcttgctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacatacatataatcccagaattggagaggtgaagacaggaaaattcctagggcttgctg 740
Query: 364 gctatcaaactatacaaatggtgagctacagaccaatgaaagaccctgatgcaaaggaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctatcaaactatacaaatggtgagctacagaccaatgaaagaccctgatgcaaaggaaa 800
Query: 424 aaacgtggacagcttcttagaaatgattgacaacattgtaatatttacctctgatctctc 483
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 801 aaacgtggacagcttcttagaaatgatttacaacattgtaatatttacctctgatctctc 860
Query: 484 tgatcttcataccggtatgaataaaactgtacctgtac 521
||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgatcttcataccggtatgaataaaactgtacctgtac 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
