BAC Information

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BAC

Clone NameMSMg01-504K01
Chromosome1 (Build37)
Map Location 80,871,306 - 80,871,484
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
Downstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504K01.T7 (MSMg01no504_k01.b1)MSMg01-504K01.TJ (MSMg01no504_k01.g1)
ACCAG579461AG579462
length737888
length of high quality
(start - end)
190 (53 - 242)---
definitionCHROMAT_FILE: MSMg01no504_k01.b1 PHD_FILE: MSMg01no504_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:17 2005CHROMAT_FILE: MSMg01no504_k01.g1 PHD_FILE: MSMg01no504_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCATTACCGGATTTCTAAGCTGTTAAGTCAGAAGTAA
TTGACTTAGTATTTCAATAACGGGTAAACACACAAAGCAAACACATTACT
TTTAAATCAACTCTGGTTTTTATATTAAATTTGGTTACCCATAATATTCA
CTGAAAAACTATTCCCACATCCTGTAGCTACACACTTAGTTAAACTTTTN
NTCTTAAAGNAAGGAAATTTNCCCNNTTGGGGGGGGGGTGGGTATAAAAA
AAAATAAAATAAGGGTGTTTGTTTGGTGTGGTGGGTTTAGTATGAGATAG
TATTTTTTTTTTTTGTGTAAATAATTAATAAGAAATATTAAAATATGTTA
TTTTTTTTGGTTGTTTGGGTAAATTGGTATGGATAATTTTTGTATTTTAG
TAATANAATTATAAATTTTATAATATAAATGTTGATTTATGTTTTATTTA
TTAATGTGTGTAGATGTAGAGGAGGGGGTATGTTGGTATTTAGAATATTT
GGTTTATTGTTAGGAGTGTCTTATGGTATATTATTGTTTTTACGAATTTT
GTTTAGTGGGGGGCCCGCGCTCCGCGTTTTCGGTCTTTTTTTGTTCTATC
TCTGCTGGTCTTTCCTTCTTCTCTTTAACTTCGTTCTAAATCTTAAAAAC
TCCCCCACCGCCGCTTTTTTGTGTCTGTGATTTTTTG
CACAACAAAAAGCCATCATCCCTTAAAACGAGACGAAGGCGGGACCCATA
AGGCGGAGCGGGGGGGCGAGACAAGCGACACCAGGGAACAAACCACGCCA
GAGTGAGCCGTGAAACGAGCGTCCTAACGCAAGAGGCAAGAAAACTGGAA
CAGAGCGACAAAACAACAAATGACGCAACGACAAACACCCCCCCAGGCAT
GGAGGGCGACTCTCCGTCTGGAATAGGGGAAGTCGAAGAGAAATATGATC
AAGTTCGTCCATCAAAGAAGCCAGGGCCGGAGCCAGTATCGGTAATTTCT
GCGACGCAGAAGAGCGGCCGGACCGGAACACAAAACATCGCCCCCCNTAC
TGGGGAAGGAACCGAAAGAAAAATTGTCCGGCCCAAAAGGGAAGAAAAGG
GGGGGGTTAAGGGGCCCCCTGGGGGGCGGGGGNCCCGGNCCCCTGGGCTG
ACTGCGAAAAAAGAGCAGGGTTTAAGGGGTTGGGAACCACCCTTAAATTA
AGTTAAATGGGCCATCCCCCGGCGGAGGNGAGATTTCCCCTTTCCCAGGG
GGAGAGGGAGGGACCACCCGGGGCCCCCCTNTGGGGCCCGGAAAATGGGG
CCCCCCCCCGGGGGAAACCCCCCAATTTAAAAAACCCCCCCCCCGGGGGG
NTTTTGGTAAAAAGAAGAGAGAGAGNACCCTCTCTTCTTATCCCCTCCGG
GAGGGGGGGGGAGGANCGGCGCACAATCACAATATCCGCGGGGAGCCCGC
CTCCCCCTAACAAATAGGGTACGAAGGGAAGACAAGACGCGCCAAANTAA
AAAAAAAACAAAAACCAGAGGGGGGCGGCGGGGGACCGAGGTGCGGGGTC
TTCGTATCCCTAACGCAAGACAGAGCCGCGCTTCGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_k01.b1 MSMg01no504_k01.b1 CHROMAT_FILE:
MSMg01no504_k01.b1 PHD_FILE: MSMg01no504_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:17 2005
         (190 letters)



>mm_chr1_80871102_80871691
          Length = 590

 Score =  308 bits (159), Expect = 2e-88
 Identities = 174/179 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcattaccggatttctaagctgttaagtcagaagtaattgacttagtatttca 64
           ||||||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 383 gaattcatcatcacaggaattctaagctgttaagtcagaagtaattgacttagtgtttca 324

                                                                       
Query: 65  ataacgggtaaacacacaaagcaaacacattacttttaaatcaactctggtttttatatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ataacgggtaaacacacaaagcaaacacattacttttaaatcaactctggtttttatatt 264

                                                                      
Query: 125 aaatttggttacccataatattcactgaaaaactattcccacatcctgtagctacacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 263 aaatttggttacccataatattcactgaaaaactattcccacatcctgtagctgcacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)