BAC Information

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BAC

Clone NameMSMg01-504M03
Chromosome1 (Build37)
Map Location 117,357,984 - 117,358,119
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504M03.T7 (MSMg01no504_m03.b1)MSMg01-504M03.TJ (MSMg01no504_m03.g1)
ACCAG579560AG579561
length738749
length of high quality
(start - end)
544 (79 - 622)544 (84 - 627)
definitionCHROMAT_FILE: MSMg01no504_m03.b1 PHD_FILE: MSMg01no504_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:27 2005CHROMAT_FILE: MSMg01no504_m03.g1 PHD_FILE: MSMg01no504_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCCGCGGAATTCAATATTTCCCTCTCAAACCTAGGAACATGTTATCCAGA
CAAAAACTAAACAAACAAACAAAAAATAGAATTAACTAAAGTTTTAAATC
AAATAGTCCTACCAGATATTTCACAATATATCTCCTAAGTATGAGAGAAT
ATACTTTCTTCTCAGTACTTCATATAATTTTTTCCATAATTTACTACATA
GTTAGACACAAAGAAACTCTCAACAGATATAAACTAATTAAAATAATTCT
CTGCATCCTATCAGATCATGGCAGATTAAAGCTGGATATAAACTATAACA
GAAATAACAAATGCTTTCAAATTCATAGAAATTGAATATCTCACTACTGG
ATGAAAATGAGTAAAAACAAAAATACACAAAAACACACACAAAAGATCAT
TTCATACGATGAAAAAAACCTTTGACAGAATCCACCATGATAAAATTCCT
GGGAATATTAGGGATAAAAAGTACATACCAATGAATAATAAAACAAATTT
ACATCAAGCCTATAGCCAACATCAAATTAAATGGATGAAAACACAACACA
GTTCTGACACAATAGGAACAAGAGAAGGCTGTTCAGTCCATCCCATTCAA
TACAATACTTGAAGTTCTAGCTGGAGNCATAAGACTGCTGAAGGATATCA
GGTGATACAATTAGAAAGGAAGAGGTCAAAATACTGTT
AAAGGGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAAATTTCAGCCAA
ATGTATGGAACTAGAAAAATACTATCCTGAGAGAGGTATACCAGACACAA
AAGAACACCTGTTGTATATATTCACTATTAATCCAAAAGCTCAGAATACT
CAAGATACAACCCACAATCCACATGGAGTTAAGAAGAAGGAAGGCCAAAT
TGTTGATATTTCTATCCTACGTAGAAGGAAGAACAAAATAATCCCTGGGG
GTAGAGAGACAAACCTGGGAGGGAGAGAGTGGTAGGCAGAGAAGTGCTAG
AGCCATTAGGTGGGAGTGGTGAGTAGGAGGGGGCATTCCCTCAGAGAGTC
AAAGCAGGGAAAGAGGGTAGATAATTTGGAGGCATTTGTGGAGGGGTAAC
AAGGATGGGGTATATCCATTGAAATGTAAATGAACACAGTGATTACTTTT
TTAAAAAAGAAATTATTTCACCATACAGTTCAAAGGTTCATCACAGTGGA
AAATCTTTATCATGGTAGTACAGTAAATAAGATGGAGAATTCCATCATGT
TGAGGAAATCTAGCACATTGGAGAAGGCCATCACAGTGGAGCAGTCCATG
AGAGTGGGGAGGTCCACCATAGTGGGAAAGCGCATCACAGAGAGAAAATC
ATCACAGTGGGGAAGTGCATGATAGTGGGGAAGTGTCCATCATGGTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_m03.g1 MSMg01no504_m03.g1 CHROMAT_FILE:
MSMg01no504_m03.g1 PHD_FILE: MSMg01no504_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:27 2005
         (544 letters)



>mm_chr1_117357376_117358319
          Length = 944

 Score =  226 bits (117), Expect = 2e-63
 Identities = 132/137 (96%), Gaps = 1/137 (0%)
 Strand = Plus / Plus

                                                                       
Query: 408 gattacttttttaaaaaagaaattatttcaccatacagttcaaaggttcatcacagtgga 467
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gattaatttttt-aaaaagaaattatttcaccatacagttcaaaggttcatcacagtgga 667

                                                                       
Query: 468 aaatctttatcatggtagtacagtaaataagatggagaattccatcatgttgaggaaatc 527
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 668 aaatctctatcatggtagtacagtgaataagatggagaattccatcatgttgaggaaatc 727

                            
Query: 528 tagcacattggagaagg 544
           |||||||||| ||||||
Sbjct: 728 tagcacattgaagaagg 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)