Query= MSMg01no504_m21.b1 MSMg01no504_m21.b1 CHROMAT_FILE:
MSMg01no504_m21.b1 PHD_FILE: MSMg01no504_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:32 2005
(247 letters)
>mm_chr1_34166349_34166995
Length = 647
Score = 424 bits (219), Expect = e-123
Identities = 237/243 (97%)
Strand = Plus / Plus
Query: 5 gaattctgggttgcttgtgtgacacagaggaaagctgtctccctcttctgggggcatagc 64
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctgggatgattgtgtgacacagaggaaagctgtctccctcttctgggtgcatagc 264
Query: 65 ttaaccccagggcatccggatgccttatgctgctcatcatttccttgactgtgattcaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaaccccagggcatccggatgccttatgctgctcatcatttccttgactgtgattcaga 324
Query: 125 tggtttatgcctcaccgggaaaaagtaaggggaactgcatttaattttagatggaaagca 184
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 tggtttatgcctcacggggaaaaagtaagggggactgcatttaattttagatggaaagca 384
Query: 185 gaaagaagaggaggaggagggaaaggagaaggaagatggggaagagggagaggaggagga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 gaaagaagaggaggaggagggaaaggagaaggaagatggggaagagggagaggaggaaga 444
Query: 245 agg 247
|||
Sbjct: 445 agg 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no504_m21.g1 MSMg01no504_m21.g1 CHROMAT_FILE:
MSMg01no504_m21.g1 PHD_FILE: MSMg01no504_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:32 2005
(523 letters)
>mm_chr1_34331742_34332664
Length = 923
Score = 961 bits (497), Expect = 0.0
Identities = 522/543 (96%), Gaps = 20/543 (3%)
Strand = Plus / Minus
Query: 1 acttcgttcgcaaagacctttctccaacagaagagaatgcaattagaaac---------- 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 acttcgttcgcaaagacctttctccaacagaagagaatgcaattagaaacgtgtgtgtgt 734
Query: 51 ----------gtgtgtgtgtgtgtgtaggggtggactgactttaaaaatgtacacatatc 100
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gtgtgtgtgtgtgtgtgtgtgtgtgtaggggtggactgactttaaaaatgtacacatatc 674
Query: 101 catcggcaacgctcatgttaaaggacacaggaaaggtctcgggtgggtaaggtgaggggt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 catcggcaacgctcatgttaaaggacacaggaaaggtctcgggtgggtaaggtgaggggt 614
Query: 161 aaatccaggaggaattggggtggggtgcagctgggaatgaagacactgcataaggaataa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaatccaggaggaattggggtggggtgcagctgggaatgaagacactgcataaggaataa 554
Query: 221 aagcaaatacactgtaaagaaagtttccatattactaaaccgatgcttccaacatgaagg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagcaaatacactgtaaagaaagtttccatattactaaaccgatgcttccaacatgaagg 494
Query: 281 cacaggctttccaaagcgttctgacgtaccttgtgctcatcaatttgaaacaagatggtg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cacaggctttccaaagcgttctgacgtaccttgtgctcatcaatttgaaacaagatggtg 434
Query: 341 tccaagataagacttggccgagaagccacgttcagagtttgctctgcctgggtaagccag 400
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 433 tccaagataagacttggccgagaagccacgttcagagtttgctcagcctgggtaagccag 374
Query: 401 ttgatgaagtcctggagggagttgtggaagttcatggccaagtgcagggcctcctccaac 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgatgaagtcctggagggagttgtggaagttcatggccaagtgcagggcctcctccaac 314
Query: 461 tttgtctgtaaaggaagaggactcagtgtgtggtactcacagtttgcttgctgtgtttca 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttgtctgtaaaggaagaggactcagtgtgtggtactcacagtttgcttgctgtgtttca 254
Query: 521 gct 523
|||
Sbjct: 253 gct 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
