BAC Information

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BAC

Clone NameMSMg01-504P11
Chromosome1 (Build37)
Map Location 168,644,189 - 168,644,905
singlet/doubletsinglet
Overlap genenone
Upstream geneCreg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik
Downstream geneLOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504P11.T7 (MSMg01no504_p11.b1)MSMg01-504P11.TJ (MSMg01no504_p11.g1)
ACCAG579718AG579719
length744791
length of high quality
(start - end)		694 (51 - 744)107 (78 - 184)
definitionCHROMAT_FILE: MSMg01no504_p11.b1 PHD_FILE: MSMg01no504_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:45 2005CHROMAT_FILE: MSMg01no504_p11.g1 PHD_FILE: MSMg01no504_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAATTTCAAAGTATAGGGACAAAAGCTGGAAAAAGCCAC
CTTGTCTGCAGCGTCTTATTTTGGCTCATTCCGTGTCAGAAGGTTCACAA
ATTCTTTGTGGTAGCCTTAATTATAAAAATGTTCTAAGAATACAGTTTGT
GTTCTCTGAGGTGCTGACTCAAGTTTTTGCTTTATAAATGATGAGAAATA
AATTGAAAGCTTAGACAATTGTTTCTTGATATACTTAATTTCGGGATAAT
GAACTATGACATTATAATCACATCTTAATAACTTTGCCTTAAATCTGATT
ACCATTTAATTAAGTCTCTTGCCAATATCTCTCTAGTTAATTAAAGTTAG
GATGTCTCCTTGATGGTTAATGTGATTATTATAATTAATTAAAACCAGAC
AAGGTGAAAAGTCTCTGAACTAGAGAGATGAAGGATTGTTTTTCTAATAT
TGAGTTTCTAAAACCAGTAGCCTCAGCTCTCCTTTAGAGAGTCTGAAGGG
AATGAAGAAAGGGACAAATTGGAAGTTAATACCCCAACTAATAAGTACAC
ACACACACACACCACATACACACAGAGACTCATACATACATCACATATAC
ACTCAGACATACACACAAACAACACAAACAAACACACACTCTTTTATACA
TACACTCTTACACACAAACACACATACACAAACATGCGCACACN

NCCCAATATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGCTCCAGGATTCTGTCTTG
ATTCTCTCTTGTAAATCTCGCTTTGTTGATTTTCTCACTCATGCTATGCG
TTTTCTAACCAGTTTTGTTGAACTGACTCTGNCTTTTGAATCTTTTTCCT
TGAAACTTTTTCTTCCAANNTANGNTAGTAGTCTACTTGGGNNNNNNNNN
NNNNNNNNNNNNNCTTGGGTGGGGGGGGGGGGAGGGGGAGGGGGGGAGGG
GGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTGGNNNNNNNNN
NNNNNNNNNNNNCAAAAACTTTCTTTTTTTTTGTGCCCCGGGCACGTTGA
AAAAGCCCTTTTTTTTTATCAAGGGCCCTGAGAGCCCACAAATTTTTTTT
TTTTACCTCCCCCCCGGTTGGAAATCCCAAAAAAACTTTGGGGAAACAGG
CCCAAAAAATAGGGAAAATATTTTTGTCCCCCCGCAAAACCCAAAAAAGA
ATGGGTTGTTGGGGATTTTTAAAAAAAAATTCCTGTTGTGGGGGGGGGGG
CCCCCCCTTTTTTTTTTTTCGGAGAAAATTTTTTTTGGGGGGGTTGGGGT
GGGGGGGAGCGGCCCCCCCCCCCCTTTTCTTTTTTGGCCCCCAAAAAAAA
AATCCTCTCTTTTTTTTTGTGGGGCGCCCCTCTATAAAAAAAAAGGGGGC
TCTTTCTCTCTTTGGTTTAGAAAGAGAGAACACAATCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_p11.b1 MSMg01no504_p11.b1 CHROMAT_FILE:
MSMg01no504_p11.b1 PHD_FILE: MSMg01no504_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:45 2005
         (694 letters)



>mm_chr1_168643985_168645078
          Length = 1094

 Score = 1236 bits (639), Expect = 0.0
 Identities = 684/717 (95%), Gaps = 28/717 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaatttcaaagtatagggacaaaagctggaaaaagccaccttgtctgcagcgt 64
           ||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcagaagcccaaagtatagggacaaaagctggaagaagccaccttgtctgcagcgt 264

                                                                       
Query: 65  cttattttggctcattccgtgtcagaaggttcacaaattctttgtggtagccttaattat 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcattttggctcattccgtgtcagaaggttcacaaattctttgtggtagccttaattat 324

                                                                       
Query: 125 aaaaatgttctaagaatacagtttgtgttctctgaggtgctgactcaagtttttgcttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaatgttctaagaatacagtttgtgttctctgaggtgctgactcaagtttttgcttta 384

                                                                       
Query: 185 taaatgatgagaaataaattgaaagcttagacaattgtttcttgatatacttaatttcgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaatgatgagaaataaattgaaagcttagacaattgtttcttgatatacttaatttcgg 444

                                                                       
Query: 245 gataatgaactatgacattataatcacatcttaataactttgccttaaatctgattacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gataatgaactatgacattataatcacatcttaataactttgccttaaatctgattacca 504

                                                                       
Query: 305 tttaattaagtctcttgccaatatctctctagttaattaaagttaggatgtctccttgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttaattaagtctcttgccaatatctctctagttaattaaagttaggatgtctccttgat 564

                                                                       
Query: 365 ggttaatgtgattattataattaattaaaaccagacaaggtgaaaagtctctgaactaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggttaatgtgattattataattaattaaaaccagacaaggtgaaaagtctctgaactaga 624

                                                                       
Query: 425 gagatgaaggattgtttttctaatattgagtttctaaaaccagtagcctcagctctcctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagatgaaggattgtttttctaatattgagtttctaaaaccagtagcctcagctctcctt 684

                                                                       
Query: 485 tagagagtctgaagggaatgaagaaagggacaaattggaagttaataccccaactaataa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagagagtctgaagggaatgaagaaagggacaaattggaagttaataccccaactaataa 744

                                                                       
Query: 545 gtacacacacacacacac----------------------------cacatacacacaga 576
           ||||||||||||||||||                            ||||||||||||||
Sbjct: 745 gtacacacacacacacacacacacacacacacacacacacacacaccacatacacacaga 804

                                                                       
Query: 577 gactcatacatacatcacatatacactcagacatacacacaaacaacacaaacaaacaca 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gactcatacatacatcacatatacactcagacatacacacaaacaacacaaacaaacaca 864

                                                                    
Query: 637 cactcttttatacatacactcttacacacaaacacacatacacaaacatgcgcacac 693
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 cactcttttatacatacactcttacacacaaacacacatacacaaacatgcgcacac 921


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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