NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTTACAAATAAGACAAACACAACATATTTCCTGAGGGAGC
TCCAGGAATAATTTGAGACATCAATCGTATCCACAACACTTTAACCTGGG
GACACAATGGCTTCAGGTTTTGGTCTTTCATGCTACAAACTTTAAGTTAA
AGGCCACATTAGTTGTCTATGAACCTTCCTTATGCTTTCCTCTAAAGTTT
GGACCTTCAAGGTGTTAAAAAAGAGAAACTAACAGCAGCAAAAAGAACCC
ATAAACAGGTAGCCTACAGGGAGTGTGAAGATGACAAAGCCAGCTGTGAA
GAAGAGAACCTCGCATCCTGGTCTATCCGTTGATTGCCTTTGTTTGACTT
TTCTCTCCTTGCTGTCTCACAGTGTCTAAGAAATAGTGTTTCCTATTATT
TCCAGTCAAGTAAAATTTAGTTGCTTGTATCCTGACAGCTTAGCTCATTC
GACTTCTCCTGCAAGTGAGCTATAAGCCCTTGCGGCAAGATGAAAAACAG
GAGTGAAAGTGGAGTGAGGACCTGAAAAACCCAGTCCTGGTTTTGTCCAG
TAATAATTTCAATGTTGTATACTCACTTAGCATTTATGCTATCCATTTAT
CTCTTTTCACATAGTATTAGTAGCTCTATTGAAGGACCATCTTTCCTAAA
ATATCATATTTATTAATTGTCACATAGTTCTTGCCTGATGAAATAATATG
TGAACAAATAACTGAATATTA

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCTACATAGAAAGTTCAAGG
CCAGCCAGGGGGTCATGGGACTGTGTAAAGACTCTAGCTGCATATGTATC
AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACG
CAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGGGAGA
GTGGGTGGGTAGGGGAGTGGGGGTGGNTNNNNNTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTTNNTTTTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTTTTCCCCTTTTTNNTTTNTTTTTTTTTTTTTTTTTTTTT
TTGTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCT
TGTTTTTTTTTTTTNNTNTTTTTTTTTTCTTTTTTTTNCTTCCCCCCCTT
TTCCCCCTTTTTTTTTTTTTATCCTTTTTTTTTCTCCTTCTTGTTAGTAC
TTTCCATCCTTTTTTACTATTCTTCACTTTGCAATTGTCGAAACTAGTTA
TCAATATTTACCCCCTTTTTTTTAGTCTTCTCTTTACCTTCTCTGCATGC
TTCTATTTCCTTCCTCATAATACCTTTAGAAGCCTTCTTTTTAGCTCTTA
TTGTCGGTTGTTAATCAGCATGCTCTATTACTATTTATCACAGTATGT

Query= MSMg01no505_h17.b1 MSMg01no505_h17.b1 CHROMAT_FILE:
MSMg01no505_h17.b1 PHD_FILE: MSMg01no505_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:24 2005
         (692 letters)



>mm_chr1_68043120_68044211
          Length = 1092

 Score = 1311 bits (678), Expect = 0.0
 Identities = 686/690 (99%), Gaps = 4/690 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgttac--aaataagacaaacacaacatatttcctgagggagctccaggaat 62
           ||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctg--acagaaataagacaaacacaacatatttcctgagggagctccaggaat 262

                                                                       
Query: 63  aatttgagacatcaatcgtatccacaacactttaacctggggacacaatggcttcaggtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatttgagacatcaatcgtatccacaacactttaacctggggacacaatggcttcaggtt 322

                                                                       
Query: 123 ttggtctttcatgctacaaactttaagttaaaggccacattagttgtctatgaaccttcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttggtctttcatgctacaaactttaagttaaaggccacattagttgtctatgaaccttcc 382

                                                                       
Query: 183 ttatgctttcctctaaagtttggaccttcaaggtgttaaaaaagagaaactaacagcagc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttatgctttcctctaaagtttggaccttcaaggtgttaaaaaagagaaactaacagcagc 442

                                                                       
Query: 243 aaaaagaacccataaacaggtagcctacagggagtgtgaagatgacaaagccagctgtga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaaagaacccataaacaggtagcctacagggagtgtgaagatgacaaagccagctgtga 502

                                                                       
Query: 303 agaagagaacctcgcatcctggtctatccgttgattgcctttgtttgacttttctctcct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agaagagaacctcgcatcctggtctatccgttgattgcctttgtttgacttttctctcct 562

                                                                       
Query: 363 tgctgtctcacagtgtctaagaaatagtgtttcctattatttccagtcaagtaaaattta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgctgtctcacagtgtctaagaaatagtgtttcctattatttccagtcaagtaaaattta 622

                                                                       
Query: 423 gttgcttgtatcctgacagcttagctcattcgacttctcctgcaagtgagctataagccc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gttgcttgtatcctgacagcttagctcattcgacttctcctgcaagtgagctataagccc 682

                                                                       
Query: 483 ttgcggcaagatgaaaaacaggagtgaaagtggagtgaggacctgaaaaacccagtcctg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgcggcaagatgaaaaacaggagtgaaagtggagtgaggacctgaaaaacccagtcctg 742

                                                                       
Query: 543 gttttgtccagtaataatttcaatgttgtatactcacttagcatttatgctatccattta 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gttttgtccagtaataatttcaatgttgtatactcacttagcatttatgctatccattta 802

                                                                       
Query: 603 tctcttttcacatagtattagtagctctattgaaggaccatctttcctaaaatatcatat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tctcttttcacatagtattagtagctctattgaaggaccatctttcctaaaatatcatat 862

                                         
Query: 663 ttattaattgtcacatagttcttgcctgat 692
           ||||||||||||||||||||||||||||||
Sbjct: 863 ttattaattgtcacatagttcttgcctgat 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)