CCCCAAGCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATGGACAGATCTTGCAAACAGAAACTAAACAGGGACACA
GTGAAACTAACAGAAGTTATGAAACAAATGGATCTGACAGATATCTACAG
AACATTTTATCCTAAAACAAAAGGAATACTTCTTCTCAGCACCTCACGGG
ACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAA
ATACAAAAATATTGAAATTGCCCCNGCTAACGAGATACAAACTAAAANNN
CNNTTTTTNNNCCGGTCNNNNNNNNNNNTGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNTTTTNNTGG
TGGGGGGGGGCGGGGGGAAAAAAAACTNNNNNNNNNNNNNNNNNTGTGGG
GAAAAAAAATCCNNNNTTTTNTNTNTTTNTTTTTNNNNNNNNNNTNNNNA
TTTNNNTATTGGGAGATGTNNNNNTCTNNNNNNNNNNNNNNNNTTNNNNN
NNNNNNNNTTNNNNNNNNNTTNNNNTNNNTNNNNNTNNNTTNNNNTTNAT
GTTGATTNNNTTTTTTTCCTTTNNNNNNNTNTNNNTTNNTTTTNNNNTTT
TTTTTTTTNTNTTTTNTTNNTANNNTTTTTTTTNTTTTTTNNNTTTTNNN
NTTTTTNNNTTNNANTTTNTTTTTTNNNNNNNTTTTTTTATAGGGGGGGG
GGGNNTCTNNTTTTNNNNNTTTTTTATNTCCTTTTTTTTATATATATTTA
TATTAGG

NNNAAAACCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAGTATCTTTA
TCACAATTATTTTGTAGGTATATGAATAGAATTTTAAAAACTTCTTTAAA
TATATGTAAAATTTGAAATAAAATAATCAGCTATAGTTTTTAATTAAATT
CCCATCAGAATTTTGAAATTTTCTTTGTTTATCTTTGAGTATATTTCTAC
TTGAGTAATAAAGTCATGACATTGATCACAGTTCTTTTGAGTAATAACTG
ATATTAAAATGCAAAGATATTATAGAATACTCAATATGTATTCAAATATG
CTAGAGTTCTTCATACAAGTAAAAAACTTTTATTTAACTCTATGTGTACC
TGGTATATTGGTCACTTAAAGTAATTTCAGCAATCTTAAAATTTCTTATT
TATAATAAATATTTAAATCCAGAATACACTTATTTTTAACTGATACATAT
TTATGAAAGTCTTTGAAATATTTTGATGTGAGTATAATTATATATGATGT
CATGATATGGCCTTACCAGCTGTCTATGCTACAGAAGCAATTTATAGTTT
AGTATCAATAGCAGCTTAGTGATATTGCCTCATAGTTCTGAGGCAGAGGA
TTCTGGGCCAAACTTGGCTAGCTTTGCATTTTGAGGTAAAAGTTACAATT
CACATTTTGGCTTGGACTGCAGAATTATCCNAN

Query= MSMg01no506_a03.g1 MSMg01no506_a03.g1 CHROMAT_FILE:
MSMg01no506_a03.g1 PHD_FILE: MSMg01no506_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:03 2005
         (644 letters)



>mm_chr1_96538213_96539256
          Length = 1044

 Score = 1230 bits (636), Expect = 0.0
 Identities = 642/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaagtatctttatcacaattattttgtaggtatatgaatagaattttaaaaacttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaagtatctttatcacaattattttgtaggtatatgaatagaattttaaaaacttctt 260

                                                                       
Query: 61  taaatatatgtaaaatttgaaataaaataatcagctatagtttttaattaaattcccatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatatatgtaaaatttgaaataaaataatcagctatagtttttaattaaattcccatc 320

                                                                       
Query: 121 agaattttgaaattttctttgtttatctttgagtatatttctacttgagtaataaagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaattttgaaattttctttgtttatctttgagtatatttctacttgagtaataaagtca 380

                                                                       
Query: 181 tgacattgatcacagttcttttgagtaataactgatattaaaatgcaaagatattataga 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tgacattgatcacagttcttttgagtaataactgatattaaaatacaaagatattataga 440

                                                                       
Query: 241 atactcaatatgtattcaaatatgctagagttcttcatacaagtaaaaaacttttattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactcaatatgtattcaaatatgctagagttcttcatacaagtaaaaaacttttattta 500

                                                                       
Query: 301 actctatgtgtacctggtatattggtcacttaaagtaatttcagcaatcttaaaatttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actctatgtgtacctggtatattggtcacttaaagtaatttcagcaatcttaaaatttct 560

                                                                       
Query: 361 tatttataataaatatttaaatccagaatacacttatttttaactgatacatatttatga 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttataataaatatttaaatccataatacacttatttttaactgatacatatttatga 620

                                                                       
Query: 421 aagtctttgaaatattttgatgtgagtataattatatatgatgtcatgatatggccttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtctttgaaatattttgatgtgagtataattatatatgatgtcatgatatggccttac 680

                                                                       
Query: 481 cagctgtctatgctacagaagcaatttatagtttagtatcaatagcagcttagtgatatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagctgtctatgctacagaagcaatttatagtttagtatcaatagcagcttagtgatatt 740

                                                                       
Query: 541 gcctcatagttctgaggcagaggattctgggccaaacttggctagctttgcattttgagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcctcatagttctgaggcagaggattctgggccaaacttggctagctttgcattttgagg 800

                                                       
Query: 601 taaaagttacaattcacattttggcttggactgcagaattatcc 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaaagttacaattcacattttggcttggactgcagaattatcc 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)