Query= MSMg01no506_a20.b1 MSMg01no506_a20.b1 CHROMAT_FILE:
MSMg01no506_a20.b1 PHD_FILE: MSMg01no506_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:06 2005
(687 letters)
>mm_chr1_29814203_29815290
Length = 1088
Score = 978 bits (506), Expect = 0.0
Identities = 521/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 163 attgacggtgtcttttgccttgcagaaactttggaagcatcccacttaggattaagtgtt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 attgacggtgtcttttgccttgcagaaactttggaagcatcccacttaggattaagtgtt 1029
Query: 223 ccaaggtctctcacactatatattttcaccaatccatctgaatctaagctgtttccaatt 282
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1028 ccaaggtctctcacactatatagtttcaccaatccatctgaatctaagctgtttccaatt 969
Query: 283 tgtgtttattagtgatataacagcaattacaatctttgggtatatacccaagagtggtat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 tgtgtttattagtgatataacagcaattacaatctttgggtatatacccaagagtggtat 909
Query: 343 agctggcaagaatcttaaaggatataaacaactattttattttttctgtgctccaatagt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 agctggcaagaatcttaaaggatataaacaactattttattttttctgtgctccaatagt 849
Query: 403 gattaccataacataaaacttgcagcaggtgctcacatacagactgacaaataaacttga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gattaccataacataaaacttgcagcaggtgctcacatacagactgacaaataaacttga 789
Query: 463 aatattttgacctttaaaaaaaaaa-gaattatatccttgttgatagagtagctagaata 521
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 788 aatattttgaccttaaaaaaaaaaaagaattatatccttgttgatagagtagctagaata 729
Query: 522 aaaacttgtctcctttaaggtgcttttggaagaacattttacaacaaaaaaagaccaaga 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aaaacttgtctcctttaaggtgcttttggaagaacattttacaacaaaaaaagaccaaga 669
Query: 582 agaacaacaataataaaaccttatacaagtatgatactttgtaaactatacaatgtgcgc 641
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 668 agaacaacaataataaaacctaatacaagtatgatactttgtaaactatacaatgtgcac 609
Query: 642 atgtcaatttgtggagataactatacataaactcattggaaataag 687
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atgtcaatttgtggagataactatacataaactcattggaaataag 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_a20.g1 MSMg01no506_a20.g1 CHROMAT_FILE:
MSMg01no506_a20.g1 PHD_FILE: MSMg01no506_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:06 2005
(654 letters)
>mm_chr1_29768534_29769590
Length = 1057
Score = 1195 bits (618), Expect = 0.0
Identities = 644/654 (98%), Gaps = 4/654 (0%)
Strand = Plus / Plus
Query: 5 cccaaggtcttgctaaggaggaactgggactgttggaacactggaggatggctttagcta 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 cccaaggtcttgctaaggaggaactgggactgttggaacactggaggacggctttagcta 263
Query: 65 tgtcagaattcaatcttaagaggcacttatgatatgaaaatattgaaagagagcacgtgg 124
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcagaattcaatcttaaaaggcacttatgatatgaaaatattgaaagagagcacgtgg 323
Query: 125 atccatacactagactaacacgggaatggaacgcgggaatgaaaaattactgtatgggta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atccatacactagactaacacgggaatggaacgcgggaatgaaaaattactgtatgggta 383
Query: 185 gggaacgctagact-cagaaggagagcttccttgaagctcttttgcctcatgagtgactt 243
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 gggaacgctagactccagaaggagagcttctttgaagctcttttgcctcatgagtgactt 443
Query: 244 ttaagcctttcggcctgtccagttgacttggctggagagcgtagcacgttcacatatgac 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 ttaagcctttcggcctgtccagttgacttggctggagagcgtagcacattcacatatgac 503
Query: 304 ttgtttctttacattaaattttatactcaaaagtatatgtatattttatctggctattca 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgtttctttacattaaatttcatactcaaaagtatatgtatattttatctggctattca 563
Query: 364 atttctttcacttttgtagcgattcacccatttctttttatcacagcctttgtgtacttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atttctttcacttttgtagcgattcacccatttctttttatcacagcctttgtgtacttt 623
Query: 424 tcatgatgtagttattatgctcaaaactcaactataaaagtgaataaaacatggcaaagt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcatgatgtagttattatgctcaaaactcaactataaaagtgaataaaacatggcaaagt 683
Query: 484 actctaacagttaaaaaattttcagaaaaaaa---ctccattacattaactcatttaatc 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 684 actctaacagttaaaaaattttcagaaaaaaaaaactccattacattaactcatttaatc 743
Query: 541 atacatatagccagaaacattatggaattcccatcattttcaatttttaaaattattctc 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 744 atacatatagccagaaacattaaggaattcccatcattttcaatttttaaaattattctc 803
Query: 601 taatatctattctgtataaatgtatttatccttacattttatacctatgaataa 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 taatatctattctgtataaatgtatttatccttacattttatacctatgaataa 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1057
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1047
Effective search space: 674268
Effective search space used: 674268
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
