BAC Information

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BAC

Clone NameMSMg01-506I11
Chromosome1 (Build37)
Map Location 88,210,200 - 88,210,772
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7
Downstream geneEG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506I11.T7 (MSMg01no506_i11.b1)MSMg01-506I11.TJ (MSMg01no506_i11.g1)
ACCAG580902AG580903
length735745
length of high quality
(start - end)
385 (82 - 466)572 (84 - 655)
definitionCHROMAT_FILE: MSMg01no506_i11.b1 PHD_FILE: MSMg01no506_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:46 2005CHROMAT_FILE: MSMg01no506_i11.g1 PHD_FILE: MSMg01no506_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAATGAGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAGTG
AGCGCGGAATTCTACAGGGTCACTACAGAACATAAATGTTTTCATTTGTT
GTTGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC
CTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTAAGAATCTGCCTG
CCTCTGCCTCTGGAGTGCTGGGATTAAAGACGTGCGCCACCACACCTGGC
TTGATGTTTGTTTTTTAATGGAGGTAGGGATGGACAGAGTTGAGAACAGC
TCAGCAGTTTGGAGCACTTGCCTTATTTTTATGACCCAGGCTCAGTTCCC
AGCATCCACATGGTGATCTACGACCATTCCTAACTCCAGTTCCAGGGGAT
CTGATGCCTTTTTCTGGCCTCCACATGCACTTAGGCATGCAAGTTATGCA
CACACATATACACATGCAAGCAAAACATACACACCTGGAGAATAATCTTA
AAGTAAAACAAACACACTGGCTAGAGAGATGGCTCAGTGGTTAAGAGCAC
TGACTGCTCTTCTGGAGGTCCAGAGTTTAATTCCTATCAACCACTTGTTA
GGCTCACAACCATCTGTGATGGGATCTGATGTCCTCTTCTTTTGTGCCCG
AAGACAGTGACCATGTTTTTTCATACCTGATATATCTTTATTTTTAATAA
TTTATATCAACTTTTTTGCACTTGTTATTGACTGT
GCGGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCCAGTCCTGGGTT
CTGCAGGCCCAGCGTTTGAAGTCACCGGCAGGAGGGAGCCCCAGGTGGTC
AACATCTGAGACCTTGCTGGGGACAGATGGAGTGCCCTGAGCACCTGTTG
GATCCGGGGGAGGAGGCTTGTCGCGGCGGGCGAGTGCCCATTCAGAGGGA
TTGACTTTGTGCTGGGCGCCAGTGGAGTGAATGGCGTGCAGTGGTCAGCA
TACCCCCGGGGCAGGCTGAGGGAGGGGTTCCCTATGTCCCCAAGGAGCAA
GGGGACCTCCATAAACCCCGGAAAAAAGCGGGGAGCGCCCCCTGCCGACC
TCCTGGACACCAGGCGCTAGAGAACTAATACCTTGGACCATTAGGTGCAA
TCTGAAATTTAGCATCACTTGAACATTATTAATGTTTTCGGAGAGCGTTG
GTTGACTTCACACCAGACAGGTATCGGAAACTGACGTCTGCAGTGAGTGC
GAAGGGTTCTTACTCTTTGCATACCCGGATGTATAAAGGTCTCCATTGAC
CCAGTTTATAATGCAAAAGCTCAGGCTTCAGCAATTCCAGCAAGGCTACC
ACCTGCCACAAAATATCAGTTAAGAGTTACAAAATATCAGTTAAGTGTCC
ATGGAGGCCCAAGCTTGGAATCTTGACACTTGTAAAGTTGAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_i11.g1 MSMg01no506_i11.g1 CHROMAT_FILE:
MSMg01no506_i11.g1 PHD_FILE: MSMg01no506_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:46 2005
         (572 letters)



>mm_chr1_88210000_88210972
          Length = 973

 Score = 1100 bits (569), Expect = 0.0
 Identities = 572/573 (99%), Gaps = 1/573 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcccagtcctgggttctgcaggcccagcgtttgaagtcaccggcaggagggagcccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcccagtcctgggttctgcaggcccagcgtttgaagtcaccggcaggagggagcccca 260

                                                                       
Query: 61  ggtggtcaacatctgagaccttgctggggacagatggagtgccctgagcacctgttggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggtcaacatctgagaccttgctggggacagatggagtgccctgagcacctgttggat 320

                                                                       
Query: 121 ccgggggaggaggcttgtcgcggcgggcgagtgcccattcagagggattgactttgtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgggggaggaggcttgtcgcggcgggcgagtgcccattcagagggattgactttgtgct 380

                                                                       
Query: 181 gggcgccagtggagtgaatggcgtgcagtggtcagcataccccc-ggggcaggctgaggg 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gggcgccagtggagtgaatggcgtgcagtggtcagcataccccccggggcaggctgaggg 440

                                                                       
Query: 240 aggggttccctatgtccccaaggagcaaggggacctccataaaccccggaaaaaagcggg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggttccctatgtccccaaggagcaaggggacctccataaaccccggaaaaaagcggg 500

                                                                       
Query: 300 gagcgccccctgccgacctcctggacaccaggcgctagagaactaataccttggaccatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcgccccctgccgacctcctggacaccaggcgctagagaactaataccttggaccatt 560

                                                                       
Query: 360 aggtgcaatctgaaatttagcatcacttgaacattattaatgttttcggagagcgttggt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgcaatctgaaatttagcatcacttgaacattattaatgttttcggagagcgttggt 620

                                                                       
Query: 420 tgacttcacaccagacaggtatcggaaactgacgtctgcagtgagtgcgaagggttctta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacttcacaccagacaggtatcggaaactgacgtctgcagtgagtgcgaagggttctta 680

                                                                       
Query: 480 ctctttgcatacccggatgtataaaggtctccattgacccagtttataatgcaaaagctc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctttgcatacccggatgtataaaggtctccattgacccagtttataatgcaaaagctc 740

                                            
Query: 540 aggcttcagcaattccagcaaggctaccacctg 572
           |||||||||||||||||||||||||||||||||
Sbjct: 741 aggcttcagcaattccagcaaggctaccacctg 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space:   541206
Effective search space used:   541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)