Query= MSMg01no506_j23.b1 MSMg01no506_j23.b1 CHROMAT_FILE:
MSMg01no506_j23.b1 PHD_FILE: MSMg01no506_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:53 2005
(617 letters)
>mm_chr1_108668954_108669970
Length = 1017
Score = 1170 bits (605), Expect = 0.0
Identities = 611/613 (99%)
Strand = Plus / Minus
Query: 5 gaattcagagtaacttacagtggttccttttttcatttgtgatgtaattttataggaaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gaattcagagtaacttacagtggttccttttttcatttgtgatgtaattttataggaaac 758
Query: 65 gttcattttaatgactttctgatgttagtgtattttcaccatttcactcttagttttaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gttcattttaatgactttctgatgttagtgtattttcaccatttcactcttagttttaac 698
Query: 125 tttaaaaaatattctcattgctgttccatttaagtacaaccaagtgacttatagaaatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tttaaaaaatattctcattgctgttccatttaagtacaaccaagtgacttatagaaatat 638
Query: 185 atttttgtagtaataaggagtacaatttaaaaaggaatatagtgatactactacaaaatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 atttttgtagtaataaggagtacaatttaaaaaggaatatagtgatactactacaaaatg 578
Query: 245 cagtttatagttttcatcagaaggattagaataatgtagagggttttactattattgaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cagtttatagttttcatcagaaggattagaataatgtagagggttttactattattgaat 518
Query: 305 gctaatagtcttgactttcagaattcgatacttcagttacagaattccacggagactgtg 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 517 gctaatagtcttgactttcagaattcgatacttcagttacagaattccacagagactgtg 458
Query: 365 ctaaattatcaattgcttgtgcaattaccatttttattctgggttacacttggtgtgaaa 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 457 ctaaattatcaattgcttgtgcaattaccatttttcttctgggttacacttggtgtgaaa 398
Query: 425 tagacctcttgttgaagataaagagttagaccaggagtgagatggtggctggactatggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tagacctcttgttgaagataaagagttagaccaggagtgagatggtggctggactatggc 338
Query: 485 ctgtctttgtaggaggtagtgagcatggtaggtaacgaggaggaagttgctgctaggagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgtctttgtaggaggtagtgagcatggtaggtaacgaggaggaagttgctgctaggagc 278
Query: 545 tcataacacagcacattttcctaggcaactgtaaattcacaacgaagaaggacatttata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcataacacagcacattttcctaggcaactgtaaattcacaacgaagaaggacatttata 218
Query: 605 ctgtattgagtcc 617
|||||||||||||
Sbjct: 217 ctgtattgagtcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_j23.g1 MSMg01no506_j23.g1 CHROMAT_FILE:
MSMg01no506_j23.g1 PHD_FILE: MSMg01no506_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:53 2005
(550 letters)
>mm_chr1_108533880_108534838
Length = 959
Score = 961 bits (497), Expect = 0.0
Identities = 543/567 (95%), Gaps = 17/567 (2%)
Strand = Plus / Plus
Query: 1 accaatttggctaggcaaagtgaccactgagccctgggggtctgtctctcagccttccca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 accaatttggctaggcaaagtgaccactgagccttgggggtctgtctctcagccttccca 260
Query: 61 acactgagctaactcatgaccttacatgcactattctgaattagccatctcctcagttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactgagctaactcatgaccttacatgcactattctgaattagccatctcctcagttga 320
Query: 121 aatcaatgttttcttcttttgtttgtttccc-----ttctgggcttacacatgtctctgt 175
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 321 aatcaatgttttcttcttttgtttgtttcccttttgttctgggcttacatatgtctctgt 380
Query: 176 ataaattagatcgaagaactgcatttgtatgtcaactaagtagattccatggcagccaca 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaattagatcgaagaactgcatttgtatgtcaactaagtagattccatggcagccaca 440
Query: 236 tgcggcaataaagttcagaatcctttccctacacattgatccatagcccagtccagactg 295
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tgcggcaataaagttcagaatcctttccctacacattgatccgtagcccagtccagactg 500
Query: 296 aaaggagactaccatctgctgctactgctcacaggcagaagtgccatcagacgaggcact 355
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aaaggagactaccatctgctgctactgctcacaggcagaagtgccatcagactaggcact 560
Query: 356 gcttgtccatgatgagacggcactctgccctgatggctgtggtggcttcaagaacctaga 415
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gcttgtccatgatgagacggcactctgccctgatggctgtggtggcttcaggaacctaga 620
Query: 416 tatggagtaacacacacaca--aacacgctcgcgcgcgc----gcgcacacacac----- 464
|||||||||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 621 tatggagtaacacacacacacaaacgcgctcgcgcgcgcatgcgcgcacacacacacaca 680
Query: 465 -tggctgccttgtactggcatgataataatgtgttacatacatgattctatgcatttctg 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggctgccttgtactggcatgataataatgtgttacatacatgattctatgcatttctg 740
Query: 524 ttcaccaaactgttatcacagggggaa 550
|| ||||||||||||||||||||||||
Sbjct: 741 tttaccaaactgttatcacagggggaa 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 959
Length adjustment: 10
Effective length of query: 540
Effective length of database: 949
Effective search space: 512460
Effective search space used: 512460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
