Query= MSMg01no506_l10.b1 MSMg01no506_l10.b1 CHROMAT_FILE:
MSMg01no506_l10.b1 PHD_FILE: MSMg01no506_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:00 2005
(459 letters)
>mm_chr1_78512153_78513011
Length = 859
Score = 611 bits (316), Expect = e-179
Identities = 319/320 (99%)
Strand = Plus / Minus
Query: 140 tctagctaccttctgattaagatgtagaattctcagctcctccagtattatgcctgcctg 199
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tctagctaccttctgatcaagatgtagaattctcagctcctccagtattatgcctgcctg 800
Query: 200 gatgctatcatgtttcccaccttgatgataacagactgaacctctgaacctgtaagccag 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gatgctatcatgtttcccaccttgatgataacagactgaacctctgaacctgtaagccag 740
Query: 260 ccccaattaaaagtttgcctttgtaagagttgccatggtcatggtgtctgttcacagcaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccccaattaaaagtttgcctttgtaagagttgccatggtcatggtgtctgttcacagcaa 680
Query: 320 tgggaaccctagctaagacagaacgtattcaggacagctacaagataaacaagcagcagc 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgggaaccctagctaagacagaacgtattcaggacagctacaagataaacaagcagcagc 620
Query: 380 acggggacacacaaactacaatttattcactcaatagaacataacttaaggtggcaccac 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acggggacacacaaactacaatttattcactcaatagaacataacttaaggtggcaccac 560
Query: 440 ttggtgcaggcgggatgaag 459
||||||||||||||||||||
Sbjct: 559 ttggtgcaggcgggatgaag 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_l10.g1 MSMg01no506_l10.g1 CHROMAT_FILE:
MSMg01no506_l10.g1 PHD_FILE: MSMg01no506_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:00 2005
(441 letters)
>mm_chr1_78345199_78346036
Length = 838
Score = 775 bits (401), Expect = 0.0
Identities = 430/441 (97%), Gaps = 3/441 (0%)
Strand = Plus / Plus
Query: 1 caggatagccagggctacacagagaaaccacttcttgaaaacaaaacaaaaacgaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatagccagggctacacagagaaaccacttcttgaaaacaaaacaaaaacgaaacaa 260
Query: 61 aagtcctcagacctagtaaaaggctcggggcatgttaagtaatgctacaacatttaagat 120
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 261 aagtcctcagaccttgtaaaaggctcggggcatgttaagtaatgct---acatttaaggt 317
Query: 121 gaacacagtcacagttgagtgaaaacacctatatccacccagggctttgcagtgggaggg 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 318 gaacacagtcacagttgagtgaaaacacctatacccacccagggctttgcagtgggaggg 377
Query: 181 gacagcagacatgttcaaagaggctgaacctgaggggtgggacaatgggtaagttggctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gacagcagacatgttcaaagaggctgaacctgaggggtgggacaatgggtaagttggctt 437
Query: 241 ttgcttttgacttttcagatggttccaagtgaaatgtgttcatcagaaaagcaagggcta 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcgcttttgacttttcagatggttccaagtgaaatgtgttcatcagaaaagcaagggcta 497
Query: 301 tatcagataccagggaagaaaaggaaatataaaaaactcaagctttcgtctcaaaaataa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aatcagataccagggaagaaaaggaaatataaaaaactcaagctttcgtctcaaaaataa 557
Query: 361 agttaaaaagataagtcacggggcacaaagaaaccagagggtcagcaacggaccgggtgg 420
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 558 agttaaaacgataagtcacggggcacaaagaaaccagagggtcagcaatggactgggtgg 617
Query: 421 ggagcccattgtttcttcatt 441
|||||||||||||||||||||
Sbjct: 618 ggagcccattgtttcttcatt 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 838
Length adjustment: 9
Effective length of query: 432
Effective length of database: 829
Effective search space: 358128
Effective search space used: 358128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
