BAC Information

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BAC

Clone NameMSMg01-506M12
Chromosome1 (Build37)
Map Location 116,249,988 - 116,250,339
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506M12.T7 (MSMg01no506_m12.b1)MSMg01-506M12.TJ (MSMg01no506_m12.g1)
ACCAG581091AG581092
length731735
length of high quality
(start - end)
280 (337 - 616)377 (319 - 695)
definitionCHROMAT_FILE: MSMg01no506_m12.b1 PHD_FILE: MSMg01no506_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:06 2005CHROMAT_FILE: MSMg01no506_m12.g1 PHD_FILE: MSMg01no506_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGCACCAATAATTGCGGCGCGAAACGATCACTATTCGTATCAGCGGCG
GAATTCCNGATTTTCANNGACGAGGCGGNACANCNACACAAGGGAGNACN
ACNCAGCNANNAAAAAGAATGACCCNANGAAANNCCNAGCCAAAGGGANG
GACCNGGAGGGCATCANCCTGAGNGAGGNAACACATTCACAAAGAAACTC
ACACAANANGNATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATA
TTTTTGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAAGAATG
AAGACTGCAGTGTGGACTTTTTTTTTTTCCNNAGANTTGGGAACAAAACA
CCCATGGAATGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATG
GACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCC
AAACGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACCCA
GATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAG
TGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGG
AGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTG
GAATTTTTTTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGC
ATATATATCAAAAGATGGCCTAGTCGGCCAN
TGGAGCATGACAGTGGTATCCTGGNGGCTCCTGGTCCCTACAGGGGTGAA
CTAAGAAGTTACGAAAAAGGGGANGACCACTGATAGTGTTGATAAAGTAT
AAATAAATGTATATCCTTCAATTTCTGTTTTCTAGTATCATTGGAAATAC
TGGAAACCAAGGTCATGAATTTATGGACCTAAGTGTCCTGTATTTCTTTG
GCAGGTATGGATTGTGTAGCCAGGAGGAAGAGGATGGTAGTTGGTGATTG
GCTGGGCTGGATAGGGGCATGCCAGTTGGGGATTGAATGTGCAGCAGGAG
GAAGGGGTTTTCTATTCTAACATACAACTCTTCAAAGGATGCTTTTTCAG
TGGAAGCTAAGTCCTGTGCAAAAAATATATGCTTCCAACACCCATGATGG
AAGGACATAGGTTCTGCTCAGGCCCATCTTTAAAGCCTGGATTTAAACCA
CATGCATCACTAGCAGAATGTGTAGATAATTTTCCTGTAGTAAATAAAAC
AAAATAAAACAAAAAACAATAAAAACCACATAAACAAAACAAAAGACTTT
AACAACTCTGTTGGGCTCCGGATCCACTCAGTGGGTACAATGCTTCCATT
GTATCTGTAAAGCCAGAGTTTCCTCTCCAGAACCTCCTAAACCATGCTTG
GTGGGACTTGTCTGTGGTTCTATTTCTAGGGACATGGAGGAAGAAGGATC
AGTAATATAAAGACATTCTCTGCAACTGAGAGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_m12.g1 MSMg01no506_m12.g1 CHROMAT_FILE:
MSMg01no506_m12.g1 PHD_FILE: MSMg01no506_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:06 2005
         (377 letters)



>mm_chr1_116249770_116250546
          Length = 777

 Score =  615 bits (318), Expect = e-180
 Identities = 349/370 (94%), Gaps = 18/370 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatacaactcttcaaaggatgctttttcagtggaagctaagtcctgtgcaaaaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aacatacaactcttcaaaggatgctttttcagtggaagctaagtcctgtgcaaaaaatat 278

                                                                       
Query: 61  atgcttccaacacccatgatggaaggacataggttctgctcaggcccatctttaaagcct 120
           |||||||||||||||||||||||||                 || |||||||||||||||
Sbjct: 279 atgcttccaacacccatgatggaag-----------------gg-ccatctttaaagcct 320

                                                                       
Query: 121 ggatttaaaccacatgcatcactagcagaatgtgtagataattttcctgtagtaaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatttaaaccacatgcatcactagcagaatgtgtagataattttcctgtagtaaataaa 380

                                                                       
Query: 181 acaaaataaaacaaaaaacaataaaaaccacataaacaaaacaaaagactttaacaactc 240
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 381 acaaaataaaacaaaaaacaataaaaaacacataaacaaaacaaaagactttaagaactc 440

                                                                       
Query: 241 tgttgggctccggatccactcagtgggtacaatgcttccattgtatctgtaaagccagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgggctccggatccactcagtgggtacaatgcttccattgtatctgtaaagccagag 500

                                                                       
Query: 301 tttcctctccagaacctcctaaaccatgcttggtgggacttgtctgtggttctatttcta 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 tttcctctccagaacctcctaaaccaggcttggtgggacttgtctgtggttctatttcta 560

                     
Query: 361 gggacatgga 370
           ||||||||||
Sbjct: 561 gggacatgga 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)