Query= MSMg01no507_a19.b1 MSMg01no507_a19.b1 CHROMAT_FILE:
MSMg01no507_a19.b1 PHD_FILE: MSMg01no507_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:27 2005
(641 letters)
>mm_chr1_89552189_89553229
Length = 1041
Score = 1096 bits (567), Expect = 0.0
Identities = 626/657 (95%), Gaps = 23/657 (3%)
Strand = Plus / Plus
Query: 5 gaattctcattttatccc-gtggattgtaactatcttcattattcatttcaatgttcaga 63
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcatttta-cccagtggattgtaactatcttcattattcatttcaatgttcaga 262
Query: 64 gtgtagtggctgctc-tcctgctacacttggtggttcctggctctttttgacaaattgtc 122
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtgtactggctgctcctcctgctacacttggtggttcctggctctttttgacaaattgtc 322
Query: 123 ttcacgttcaaagcatggcttttctccctagaacctactagtgcagtgaccctttaatat 182
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 323 ttcccgttcaaagcatggcttttctccctagaacctactagtgcagtggccctttaatat 382
Query: 183 agttcttcatgctgtggtgacccccaatcataaaactaatttcattgctacttcattaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agttcttcatgctgtggtgacccccaatcataaaactaatttcattgctacttcattaac 442
Query: 243 tataattttgctactgttatacatcagaaggtaaatatttttgaagatagaggtttgcca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tataattttgctactgttatacatcagaaggtaaatatttttgaagatagaggtttgcca 502
Query: 303 aaggggtcacaaccaataggttgagaacctctactctagaaatatatatatcaggttctg 362
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 aaggggtcacaaccaatagtttgagaacctctactctagaaatatatatctcaggttctg 562
Query: 363 ctgtgccttcccagccccagattgtaggctcttagctgaatttaagaacctctgggtctt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgtgccttcccagccccagattgtaggctcttagctgaatttaagaacctctgggtctt 622
Query: 423 tgtaatggggaaagcacccaagatgtgaacaatgctcattgctgttagtctatgccctct 482
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 623 tgtaatggggaaagcacccaagatgtgaacagtgctcattgctgttagtctctgccctct 682
Query: 483 cagcagacagaaccaagaaggtgggggagaaag-g-----------------gtgtgtgt 524
||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 683 cagcagacagaaccaagaaggtgggggaggaagtgtgtgtgtgtgtgtgtgtgtgtgtgt 742
Query: 525 gtgtgtgtgtgtgtgtatacacaattcatactgctacttcccattcaaatcccaaacaac 584
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtgtgtgtgtgtgtgtataca--attcatactgctacttcccattcaaatcccaaacaac 800
Query: 585 agaattgctctgcagctccctccctagcctggcttgcatgcttctccttgttcctta 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaattgctctgcagctccctccctagcctggcttgcatgcttctccttgttcctta 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_a19.g1 MSMg01no507_a19.g1 CHROMAT_FILE:
MSMg01no507_a19.g1 PHD_FILE: MSMg01no507_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:27 2005
(505 letters)
>mm_chr1_89723558_89724462
Length = 905
Score = 913 bits (472), Expect = 0.0
Identities = 500/516 (96%), Gaps = 11/516 (2%)
Strand = Plus / Minus
Query: 1 aggacctctgctcactctggccccactcattccagcccaaagatttatttattactataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aggacctctgctcactctggccccactcattccagcccaaagatttatttattactataa 757
Query: 61 ataagtacactgtagctgtcttcagacataccagaagagggcatctggtctcattagaaa 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 756 ataagtacactgtagctgtcttcagaaataccagaagagggcatctggtctcattagaaa 697
Query: 121 tggttatgagtcaccatgtggtcactggtatttgaactcaggatctctagaagagtagcc 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 696 tggttatgagtcaccatgtggttgctggtatttgaactcaggatctctagaagagtagcc 637
Query: 181 agtgctcttaaccactgagccatctctccagccccgagaagtaatttcaaataca----- 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agtgctcttaaccactgagccatctctccagccccgagaagtaatttcaaatacaagtat 577
Query: 236 ------atacataatcaattttgcagctgtttctgaaagtttgcttctgttctttcaaaa 289
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gcaatgatacatgatcaattttgcagctgtttctgaaagtttgcttctgttctttcaaaa 517
Query: 290 ttgaaattacaaccccagggtgacattatttttaaaatttgcatcactggaggaggtcac 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 516 ttgaaattacaaccccagggtgacattatttttaaaatttgcatcactggaggaggccac 457
Query: 350 gaacatgtcaaggacttgttgggaggtcagaggacaacttgtgggaaagtcattctctcc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaacatgtcaaggacttgttgggaggtcagaggacaacttgtgggaaagtcattctctcc 397
Query: 410 ttcccctacatgagttccagagatcaaagtcatggcaccaggctgggaagctggcatttt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttcccctacatgagttccagagatcaaagtcatggcaccaggctgggaagctggcatttt 337
Query: 470 tgccagctcatcccagtagcccaagtgagcattcac 505
||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgccagctcatcccagtagcccaagtgagcattcac 301
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
