ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCGGAA
TTCCTCACCCCTAATCCCTTTACCCCATAAAAACCCCTAGCTTTCGAGCC
TCAGGGTCAAATCCACTGTCTCCTGCGTGAGATATGTTTCGACCAGGAGG
TCTGTCATTACACTACCTCATGTGTTTACATCAAGAAGGATTCTCATGTT
TCTTTGGGTGTGCTCTCTCTCCCAAGACTAGAGTGGGGGTCCCTGAAAGG
GGGTCTTACAGCTTGTACCTGTTTCATGGAAGTTTTTGAAAACTATTTGT
GAAAGGATATTCTATTTGAGAAAACCTTCCCTTCCCTATTGAAAATCCTC
ACAGTTGTTGCTTGCAAGATGAAATGGAACGTTTTTCTGCAAGCATTCTC
CCACCTGTGAGAGCCTCACCTGATGCTCAAACCCCTGGAGTTAAATTGAT
TGACTGACATTTGATCAGTTAGCTTTCCAGATCCTGCCTGAGCTACAAGT
GATTCTGTCTTGTAAGCACTTGTTTCTGGCTTTGTCATTTGGGTACAAAG
TAGATTCATCCATCCTCATATTCTCCAAAATTAAACATAGGTGTCTCAGT
GAAGATTTCTAGTACTCTGATGAAACACCATGACCAAAAGCAAGTTGAGA
AGGAAAAGCATTATTCTTTATACACCTCTAGGTGATAGTCCATCACTGAA
GGAAGTCAGAGAGGGAATTCAAACAGGGTAGGAACCAAGAGCTGATGCAG
AGGCCATGGAGACTGAGTACTGGCTTACTTTCA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACGCAGTATTGTGTTTTTTGTTGTTGTT
GGTTTTGTTTTTGTTTTTGTTTTTCTACTAAGGAATTCACTTCACAGTCA
GAAGTTCCTTCATAGAGACGTTCAACAGTGGGCCTATGATTATGGAATTC
ACTGGTCTTACTATGTCTCCTGTCTCCATTATGCTGAAACAGTTGGCTTG
ACAGAAAGATAGAATAGCCTTTTGAAGACACCATGTCAGTGCCAATGAAA
TGGCACCAGCCTTGAGGTCTAGGATGGAGTTCTCCAAAGGGCAGTTCAAG
GTTTGAGTCAGCATCCAGTATATGGTACAGTTTCTCTCATATTCAGGATG
CATGGGTCCAAGAATCAAGGGATGAAGAGGGAATGATAGTTCCACTCACT
ATCACTCTTACTTACCCACTAGGATAAGTTTTGTCTTCTCTTCTTGTAAT
CTAAAGTTTTACTGTCCTAGAAGTTTTAGTTTCAGAGTGGGAAACACTTT
TGCCAAGCGTCTCAACAATCATGGTTCTGAACTGGAAGCTCAGACTTCCC
CCTGGCCACTGTGAGCTTGTCATGTCATTAAACCAACAGTTAAAGAAAGG
AATACTATGTTAGGAGTAGTGATTGATCCAGATTTTGAAGGGAAAATTGG
ATTGTTTCTCCACAATGGAGGTAAGAAACATCATATTTGGAGTCCAGGAG
ATCCTTTATGACATCTCTTGGGGCTATTACATN

Query= MSMg01no507_c03.b1 MSMg01no507_c03.b1 CHROMAT_FILE:
MSMg01no507_c03.b1 PHD_FILE: MSMg01no507_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:33 2005
         (698 letters)



>mm_chr1_12025943_12027039
          Length = 1097

 Score = 1181 bits (611), Expect = 0.0
 Identities = 674/695 (96%), Gaps = 1/695 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcctcacccctaatccctttaccccataaaaacccctagctttcgagcctcagggt 63
           ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||
Sbjct: 959 gaattcctcacccctaagccttttaccccataaaaacccctagctttccagcctcagagt 900

                                                                       
Query: 64  caaatccactgtctcctgcgtgagatatgtttcgaccaggaggtctgtcattacactacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 caaatccactgtctcctgcgtgagatatgtttcgaccaggaggtctgtcattacactacc 840

                                                                       
Query: 124 tcatgtgtttacatcaagaaggattctcatgtttctttgggtgtgctctctctcccaaga 183
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 839 tcatttgtttacatcaagaaggattctcatgtttctttgggtgtgctctctctcctgaga 780

                                                                       
Query: 184 ctagagtgggggtccctgaaagggggtcttacagcttgtacctgtttcatggaagttttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ctagagtgggggtccctgaaagggggtcttacagcttgtacctgtttcatggaagttttt 720

                                                                       
Query: 244 gaaaactatttgtgaaaggatattctatttgagaaaaccttcccttccctattgaaaatc 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 719 gaaaactatttgtgaaagaatattctatttgagaaaaccttcccttcccta-tgcaaatc 661

                                                                       
Query: 304 ctcacagttgttgcttgcaagatgaaatggaacgtttttctgcaagcattctcccacctg 363
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 ctcacagttgttgattgcaagatgaaatggaacgttttcctgcaagcattctcccacctg 601

                                                                       
Query: 364 tgagagcctcacctgatgctcaaacccctggagttaaattgattgactgacatttgatca 423
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 600 tgagagcctcacctgatgctcaaagccctagagttaaattgattgactgacatttgatca 541

                                                                       
Query: 424 gttagctttccagatcctgcctgagctacaagtgattctgtcttgtaagcacttgtttct 483
           |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct: 540 gttagctttccagatcctgcctgagccacaaatgattctgtctagtaagcacttgtttct 481

                                                                       
Query: 484 ggctttgtcatttgggtacaaagtagattcatccatcctcatattctccaaaattaaaca 543
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 480 ggctttgtcattttggtacaaagtagattcatccatcctcatattcttcaaaattaaaca 421

                                                                       
Query: 544 taggtgtctcagtgaagatttctagtactctgatgaaacaccatgaccaaaagcaagttg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 420 taggtgtctcagtgaagatttctagtactctgatgaaacaccatgaccaaaagcaagttc 361

                                                                       
Query: 604 agaaggaaaagcattattctttatacacctctaggtgatagtccatcactgaaggaagtc 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 360 agaaggaaaagcattattctttatacacctctaggtgatagtccatcactgaagtaagtc 301

                                              
Query: 664 agagagggaattcaaacagggtaggaaccaagagc 698
           |||||||||||||||||||||||||||||||||||
Sbjct: 300 agagagggaattcaaacagggtaggaaccaagagc 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space:   747856
Effective search space used:   747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)