BAC Information

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BAC

Clone NameMSMg01-507C09
Chromosome1 (Build37)
Map Location 114,158,243 - 114,158,932
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897
Downstream geneLOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507C09.T7 (MSMg01no507_c09.b1)MSMg01-507C09.TJ (MSMg01no507_c09.g1)
ACCAG581369AG581370
length7841,607
length of high quality
(start - end)		687 (72 - 758)---
definitionCHROMAT_FILE: MSMg01no507_c09.b1 PHD_FILE: MSMg01no507_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:35 2005CHROMAT_FILE: MSMg01no507_c09.g1 PHD_FILE: MSMg01no507_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCAATAAAGTATTCCATGGTTCACAGTTATTCTGTAACCCGTGTAT
CCTAATTAATATGACCCTACGTAGGAACCTCAATGCAGCAGACATTGACA
AGTGGCACTCAAATTCCAGGGACCCATGAAAAGGAAGATGTCAGGAGGGT
GAGAATCTTTGGTAAGGAAACCTTATTAAAAACTGTGTTACAAGGTTATT
TATCAAAAACGTTTTATAGGGAAATGGGACAAGGTAAATTTATTCATTAT
ATTTCATTTTTGCAGCATTTGCTTAAAACTCATTGCGCTTGAGTTAACAC
CTTCCATCCAAAAATGTTTATCTGTTTGTCTATGTGTTTGTGTGTAGGTA
TATATGTATATATGTAAACATGCATGAATATTTGTGGAGTTAATTGTGAC
AGAAGGCCGGGCCCAGCCAGAGTGTGAGTGTATGAATATGTATATGTGCC
TGTAAATATTTGCCTGTATTCAGCATATTAATTCTTTTTTTTGCTCAGAG
GAGCACCAGCAATAAATCCTTTCACTGAATTCCCTGCTGCTAAGCAGTTA
TTTGCCATATATTAGTGCTTATTAAAGTATAAGTAATAAAGGGTTAAGAA
AGAGTAAAGTTTCCCCAGTGCTTATTTAAGCATAGTTAAATAAAGTATCA
AGAGTAATAATGTTTAATAAGGAACATAGTTAAAGAAGATGCCAATTTTT
TTAATAACATAAAATAAAGAAAAAAGGTTTTAAN

AACAAATATACATAATGTAAAAGCGCNCCCTTGAAACAGACACACAAGGN
GTATTCTCCCTCACACCACCANGCTGAGNAGCGGCTTANATGAGCGATTT
ATCTCCTCCAAAACAGAGACAGAAATAGAGGGAAAGGCGCGTGTGTGCGT
GCTTCTACGCTTAGATAGTTAAAATCATAGGCAGAGATAGTGAGACGATG
ATATAATGTATATATGATTCATGATGTATACGCTTGTCTATGGTAGCGCC
ATGCGCTCTGCCGACCGATGCTTATTCTCTACTATCTAATAGTGACCACT
GACTCNCCTACCATACAGACGACCCTCGCACCTCTCGCTCGTCTATACAA
CCACATGAGAATACAGGACAAGCTCCTACATGAACTGGTTAACTGATGCG
ATGCTTGACTTGATACGACGCGCTCAGTCGCGTACGTATAGAACTATTCG
CAATAGTGTCGACACAAAGACCAAACAGAATAGATACCATAGAGTAACCA
NTAATATATATAATAGATANCACCCAGACCTATGATAANAAAAGCAGCAT
ACGAACATACNCAACATCACACACGACAAGCACCACACACATGACAGACT
ATGAATACTATAGCCGCGCAGACAAGAGGAAGGCGCGCGCCTATAGGAGG
TGTACCGCCTGTAGTCCTGCGTGGGCGCATAGTAATTGCGCCGAGTGATC
TGCGCTCGTTCTCACAGGCTATACACCGCGTTATCAATAAGTATTACGAT
ATGTCAGATTAGCATGGCGACTTACATAAACAGCATGTCCCTATATATAC
TATAAGGATAACTCATGACTGTGCTCGCGTGCCCTCTCTTGTACGTCATG
TCGCAGACTGATATTGCTTCGCATCACTGTCAACGATGGTGCATTGAGTC
AGCATGTCGCTAACGCATGTCTCTACGGACGATACGGTTGACATAGTTAT
ATATATTGAACTCATACGAGTGCACGAATACACCTACACGAGTATTGTTC
CTACGTATATGGTAACGCGCCAGAATCAACACTACGTCNTCATATTCTAT
TCATTACGCAATAGCAACTGCACGACGTTATCGACGCATCCCAANGCGAA
GAGTGACATATGACTATGCAGAGCATCTGACTGTACTCTGCTCGACNAAC
AGGACATACCATTAGTCACTACATCTATCACGTCTACACATGATCATACA
CCATGTGATNAACGATATCANTCGTCCACTGATACCTNGACATAGGACGA
TNGACGTGCGGCGTATCTGTACAGCGCTTANGGCCAAGAGGGTCATACGG
TATGATGACAGAATCNCGCGTCNANTATNACTAACCGAGACGCATGCGAC
GATACGATATATANANTATAAGAATTGATACAGTGTCGTGACGAGAGTAC
AGTATGTAATGATAACGATCGCAGTGTGATAGTATATCTATCGAGCATCT
ACAATTGCTGATCGACAGAAGCGTGATACGACATGTGATCATACTCATGT
GAGTGATACGTGACNGATCANGACTANCTGATGCGCGNTATGCGGCAGAT
GTATCTCGAGACTATAACGGTGTTGTATGATNCGTGATNAGACCCGATCG
ATATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_c09.b1 MSMg01no507_c09.b1 CHROMAT_FILE:
MSMg01no507_c09.b1 PHD_FILE: MSMg01no507_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:35 2005
         (687 letters)



>mm_chr1_114158044_114159130
          Length = 1087

 Score = 1147 bits (593), Expect = 0.0
 Identities = 666/691 (96%), Gaps = 5/691 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttcacagttattctgtaacccgtgtatcctaattaatatgaccctacgtaggaacctc 60
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggttcacaattattctgtaacccatgtatcctaattaatatgaccctacgtaggaacctc 259

                                                                       
Query: 61  aatgcagcagacattgacaagtggcactcaaattccaggga-cccatgaaaaggaagatg 119
           ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 260 aatgcagcagacattcacaagtggcactcaaattccagggatccc-tgaaaaggaagatg 318

                                                                       
Query: 120 tcaggagggtgagaatctttggtaaggaaaccttattaaaaactgtgttacaaggttatt 179
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 319 tcaggagggtgagaatctttggtaaagaaaccttattaaaaactgtgttccaaggttatt 378

                                                                       
Query: 180 tatcaaaaacgttttatagggaaatgggacaaggtaaatttattcattatatttcatttt 239
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 379 tatcaaaaacgttttatagggaaacgggacaaagtaaatttattcattatatttcatttt 438

                                                                       
Query: 240 tgcagcatttgcttaaaactcattgcgcttgagttaacaccttccatccaaaaatgttta 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 439 tgcagcatttgcttaaaactcattgcgcttgagttaacaccttccatccaaatatgttta 498

                                                                       
Query: 300 tctgtttgtctatgtgtttgtgtgtaggtatatatgtatatatgtaaacatgcatgaata 359
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctgtttgtctatatgtttgtgtgtaggtatatatgtatatatgtaaacatgcatgaata 558

                                                                       
Query: 360 tttgtggagttaattgtgacagaaggccgggcccagccagagtgtgagtgtatgaatatg 419
           |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 559 tttgtggagttaattgtgacagtaggccgggcccagtcagagtgtgagtgtatgaatatg 618

                                                                       
Query: 420 tatatgtgcctgtaaatatttgcctgtattcagcatattaattcttttttttgct-caga 478
           |||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||
Sbjct: 619 tatatgtgcctgtaaatatttgcctgtataaagcatattaattcttttttttccttcaga 678

                                                                       
Query: 479 ggagcaccagcaataaatcctttcactgaattccctgctgctaagcagttatttgccata 538
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 679 ggagcaccagcaataaatcctttcactgaattcgctgctgctaagcagttatttgtcata 738

                                                                       
Query: 539 tattagtgcttattaaagtataagtaataaagggttaagaaagagtaaagtttccccagt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tattagtgcttattaaagtataagtaataaagggttaagaaagagtaaagtttccccagt 798

                                                                       
Query: 599 gcttatttaagcatagttaaataaagtatcaagagtaataatgtttaataaggaacatag 658
           |||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct: 799 gcttatttaagcatagttaaataaagtaccaagagttacaatgtttaataaggaacatag 858

                                          
Query: 659 ttaaagaagatgccaattttttt--aataac 687
           ||||||||||||||| |||||||  ||||||
Sbjct: 859 ttaaagaagatgccagtttttttttaataac 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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