BAC Information

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BAC

Clone NameMSMg01-507D18
Chromosome1 (Build37)
Map Location 78,341,601 - 78,477,097
singlet/doubletdoublet
Overlap geneSgpp2, Farsb
Upstream geneEpha4, LOC100039330, Pax3, LOC100039210, LOC100039382
Downstream geneMogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507D18.T7 (MSMg01no507_d18.b1)MSMg01-507D18.TJ (MSMg01no507_d18.g1)
ACCAG581434AG581435
length753775
length of high quality
(start - end)		688 (50 - 737)564 (78 - 641)
definitionCHROMAT_FILE: MSMg01no507_d18.b1 PHD_FILE: MSMg01no507_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:42 2005CHROMAT_FILE: MSMg01no507_d18.g1 PHD_FILE: MSMg01no507_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,476,414 - 78,477,097)(78,341,601 - 78,342,164)
sequence
NNCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCGTTTTCTTTCATGTGACAACTCACTGTTCACTTCCGAC
ACTTTCCTTCTCTGTGTTCGTGATGATGTCTTCCGTTTGCTTCGGTGGCA
AAACTTTTCGTGTAAGGTGGCAGATAAGTATTGCCTCTGTCATTACTCAG
TTGTCTCAGTGTATGACAGTAGAATAACGTGTGTAACCTGTGTTTATCTG
TGTTCCAGTAAAGTATTGTTTGCAAAAACAAGTGGGCGCGTGGTTTTCCG
GCGGACACCGTTTGCTGATGGTGCTTTAGGTGGAGAGAGTGCTCTGCCGT
GAAATCAGTAGTTTTCTGTCTGCTATCGTTACAAGACGTGTAGCTTTCTC
GTGTTGTTATTATTGCAGAACAGAAGTATATTCTGTAGCTTATTAAACTC
TCTGGCTTGTTTAGACTTCTGAGAAGCAAATCATAAGCAAGGAACAAGGT
CATGGGAAGGCACAGGGGGCCTCAGATGTTGTGCTTTACAAGATTGACGT
CCCTGCCAACAGATACGACCTCCTGTGTCTGGAAGGACTGGCTCGGGGCC
TCCAGGTCTTCAAAGAAAGGTAAGGAATTGCACATACTGCTGAGTTGTCT
CGCCACTTTTCCCTCTGCTGCTGTCAGCAGACGAGTTCAGATTTCTAGGA
GAAACCTCATATGGGTAAAACAGCTTCAGGCCCTCAGAGTGGTGATTGGG
AGA

TTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAGGGACTTGTTCTGAGGG
CAGGGTCAACATGGAACTTCTAAACTACACTCCAGGTTGTAGATCCTGAG
ATAGAACCAGGACTGGCTGTCTTTTTCTCTGAGGAGCCCTGGCTGTCTTT
CAGCACCTGCCTGTGGGAATGAACTCTGTTTCCTGCCATTCTCTCTAAAC
CCAGAGTGGGACAACACTGGTTGGAGTTGCCCTTAAAGATCCACTTCTGG
AAAAATAAAATAAAACCAGCAGGAAAGTGGAAGGGGACTGGTTGGGAGGA
GGAAGTGATCAGCCATAAGGGGAACAAGAGAGAGCAGGGAGGACAGTGGT
GAGTAAGATCAATTGAATTATATAGGGGATGGAGAGATGGCTCAGTGGTT
AAGAATGCTGACTGCTCTTCCAGAGGACCTGAGTTCAAGTCCCAGCAATC
ACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGT
GTGTTTGAAGAGAGTGTCAGTGTACTATCATACTTAAAATAAATAAAATA
CATTATATGTATGACATTATGTACATGCATGACATTATGTACATGCATGA
CACTATGTACATGCATGACACTATGTACATGCATGACACTATGTACATGC
CTGACATTATATACATGTATGACAACATGTACATGTATAACCTATGTACA
TGTATGACATTATGTACTTGTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_d18.b1 MSMg01no507_d18.b1 CHROMAT_FILE:
MSMg01no507_d18.b1 PHD_FILE: MSMg01no507_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:42 2005
         (688 letters)



>mm_chr1_78476210_78477297
          Length = 1088

 Score = 1268 bits (656), Expect = 0.0
 Identities = 677/684 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcgttttctttcatgtgacaactcactgttcacttccgacactttccttctct 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 gaattcagtgttttctttcatgtgacaactcactgttcacttccgacactttccttctct 829

                                                                       
Query: 65  gtgttcgtgatgatgtcttccgtttgcttcggtggcaaaacttttcgtgtaaggtggcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gtgttcgtgatgatgtcttccgtttgcttcggtggcaaaacttttcgtgtaaggtggcag 769

                                                                       
Query: 125 ataagtattgcctctgtcattactcagttgtctcagtgtatgacagtagaataacgtgtg 184
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 768 ataagtattgcctctgtcattactcagttgtctcagtgtatggcagtagaattacgtgtg 709

                                                                       
Query: 185 taacctgtgtttatctgtgttccagtaaagtattgtttgcaaaaacaagtgggcgcgtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 taacctgtgtttatctgtgttccagtaaagtattgtttgcaaaaacaagtgggcgcgtgg 649

                                                                       
Query: 245 ttttccggcggacaccgtttgctgatggtgctttaggtggagagagtgctctgccgtgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttttccggcggacaccgtttgctgatggtgctttaggtggagagagtgctctgccgtgaa 589

                                                                       
Query: 305 atcagtagttttctgtctgctatcgttacaagacgtgtagctttctcgtgttgttattat 364
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 588 atcagtagttttctgtctgctatcattataagacgtgtagctttctcgtgttgttattat 529

                                                                       
Query: 365 tgcagaacagaagtatattctgtagcttattaaactctctggcttgtttagacttctgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 528 tgcagaacagaagtatattctgtagcttattaaactctctggcttgtttagacttctgaa 469

                                                                       
Query: 425 aagcaaatcataagcaaggaacaaggtcatgggaaggcacagggggcctcagatgttgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aagcaaatcataagcaaggaacaaggtcatgggaaggcacagggggcctcagatgttgtg 409

                                                                       
Query: 485 ctttacaagattgacgtccctgccaacagatacgacctcctgtgtctggaaggactggct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctttacaagattgacgtccctgccaacagatacgacctcctgtgtctggaaggactggct 349

                                                                       
Query: 545 cggggcctccaggtcttcaaagaaaggtaaggaattgcacatactgctgagttgtctcgc 604
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 348 cggggcctccaggtcttcaaagaaaggtaaggaattgcacacactgctgagttgtctcgc 289

                                                                       
Query: 605 cacttttccctctgctgctgtcagcagacgagttcagatttctaggagaaacctcatatg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cacttttccctctgctgctgtcagcagacgagttcagatttctaggagaaacctcatatg 229

                                   
Query: 665 ggtaaaacagcttcaggccctcag 688
           ||||||||||||||||||||||||
Sbjct: 228 ggtaaaacagcttcaggccctcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_d18.g1 MSMg01no507_d18.g1 CHROMAT_FILE:
MSMg01no507_d18.g1 PHD_FILE: MSMg01no507_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:42 2005
         (564 letters)



>mm_chr1_78341401_78342364
          Length = 964

 Score = 1044 bits (540), Expect = 0.0
 Identities = 558/564 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagagggacttgttctgagggcagggtcaacatggaacttctaaactacactccaggt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagagggacttgttctgagagcagggtcaacatggaacttctaaactacactccaggt 260

                                                                       
Query: 61  tgtagatcctgagatagaaccaggactggctgtctttttctctgaggagccctggctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagatcctgagatagaaccaggactggctgtctttttctctgaggagccctggctgtc 320

                                                                       
Query: 121 tttcagcacctgcctgtgggaatgaactctgtttcctgccattctctctaaacccagagt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tttcagcacctgcctgtgggaatgaactctgtttcctgccattccctctaaacccagagt 380

                                                                       
Query: 181 gggacaacactggttggagttgcccttaaagatccacttctggaaaaataaaataaaacc 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gggacaacactggttggagttgcccttaaagacccacttctggaaaaataaaataaaacc 440

                                                                       
Query: 241 agcaggaaagtggaaggggactggttgggaggaggaagtgatcagccataaggggaacaa 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 agcaggaaagtggaaggggactggttgggaggaggaagggatcagccataaggggaacaa 500

                                                                       
Query: 301 gagagagcagggaggacagtggtgagtaagatcaattgaattatataggggatggagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 501 gagagagcagggaggacagtggtgagtaagatcaattgaattatataggagctggagaga 560

                                                                       
Query: 361 tggctcagtggttaagaatgctgactgctcttccagaggacctgagttcaagtcccagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggctcagtggttaagaatgctgactgctcttccagaggacctgagttcaagtcccagca 620

                                                                       
Query: 421 atcacatggtggctcacaaccatctgtaatgagatctgatgccctcttctggtgtgtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcacatggtggctcacaaccatctgtaatgagatctgatgccctcttctggtgtgtttg 680

                                                                       
Query: 481 aagagagtgtcagtgtactatcatacttaaaataaataaaatacattatatgtatgacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagagagtgtcagtgtactatcatacttaaaataaataaaatacattatatgtatgacat 740

                                   
Query: 541 tatgtacatgcatgacattatgta 564
           ||||||||||||||||||||||||
Sbjct: 741 tatgtacatgcatgacattatgta 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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