Query= MSMg01no507_p19.b1 MSMg01no507_p19.b1 CHROMAT_FILE:
MSMg01no507_p19.b1 PHD_FILE: MSMg01no507_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:44 2005
(385 letters)
>mm_chr1_50012651_50013435
Length = 785
Score = 712 bits (368), Expect = 0.0
Identities = 380/386 (98%), Gaps = 5/386 (1%)
Strand = Plus / Plus
Query: 1 gctcatactgcatagctaaaggactaggcaatgtaaatgcaaaaaattttaagtactata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcatactgcatagctaaaggactaggcaatgtaaatgcaaaaaattttaagtactata 260
Query: 61 ttaaagaaaaacataatactttatttaatagcaacaatttataaattaagcacctcttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaagaaaaacataatactttatttaatagcaacaatttataaattaagcacctcttga 320
Query: 121 aaatacattgcttttaggtgcaatgctttttggtgtttttttgtttgtttgtttgtttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatacattgcttttaggtgcaatgctttttggtgtttttttgtttgtttgtttgtttgt 380
Query: 181 ttgtttgtttgtttgttattttttt-ggagacagtgtatctaggcccaaatgtttcaatt 239
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtttgtttgtt----attttttttggagacagtgtatctaggcccaaatgtttcaatt 436
Query: 240 attgtagcatttaaaactggcacttattaataggtgctattgatgttagactataatata 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attgtagcatttaaaactagcacttattaataggtgctattgatgttagactataatata 496
Query: 300 attgcaatcaaatgtagaaataaatatgagttcatatactttttactttatcacaaattt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attgcaatcaaatgtagaaataaatatgagttcatatactttttactttatcacaaattt 556
Query: 360 accttgacttaccaaatttttaaata 385
||||||||||||||||||||||||||
Sbjct: 557 accttgacttaccaaatttttaaata 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_p19.g1 MSMg01no507_p19.g1 CHROMAT_FILE:
MSMg01no507_p19.g1 PHD_FILE: MSMg01no507_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:44 2005
(570 letters)
>mm_chr8_69931343_69932318
Length = 976
Score = 832 bits (430), Expect = 0.0
Identities = 520/576 (90%), Gaps = 43/576 (7%)
Strand = Plus / Plus
Query: 1 ttttgctatgaaggaagtcatggtgtgtgcgttgagtgtgaacatgactccacatctgct 60
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 201 ttttgctatgaaggacgtcatggtgtgtgctttgagtgtgaacatggctccacatctgct 260
Query: 61 aggagtcgtctcagaaaagcacaggtctgcaagtggaaaaggggtaaagtcaaactcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagtcgtctcagaaaagcacaggtctgcaagtggaaaaggggtaaagtcaaactcaaa 320
Query: 121 ggccatgtaaattatagccttaagcacagttcatttctgtggtaatagtcttgtttgcaa 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccatgtaaattatagccttaagcacagttcatttctgtggtaatagtcttgtttgcaa 380
Query: 181 tagctcttaaatatggaagtatactgtgtctctgggtgattttcacagtgagggtg--gt 238
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 381 tagctcttaaatatggaagtatactgtgtctctgggtgattttcacagtaagggtgttgt 440
Query: 239 ----gttgtttttgttgttgttgttgctttaccttggtttgttttttgtttagatggtcg 294
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgttgttgttgttgttgttgttgctttaccttggtttgttttttgtttagatggtcg 500
Query: 295 gtttttttgagatagcgttttgctgtataatggccctggctatcctggaactccctatat 354
||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 501 -----------------ttttgctgtataagggccctggctatcccggaactccatatat 543
Query: 355 agaccaggctggcctcaaagtctgagatctacctgcttctgcctccctattgttgagatt 414
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 544 agaccaggctggcctcaaagtctaagatctacctgcttctgcctccctattgttgagatt 603
Query: 415 aaaggcttctgccaccgctgcccagctgttagttttgttttacttgggtcaattttttat 474
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaaggcttctgccaccactgcccagctgttagttttgttttacttgggtcaattttttat 663
Query: 475 gttaatgtttgttctttattggttattttatttatttatttatttatttatttatttatt 534
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gttagtgtttgttctttattggttattttatttatttatttatttattt----------- 712
Query: 535 tatttatttttcaaatgttacccccttcccagtttc 570
|||||||||| ||||||||||||||||
Sbjct: 713 ---------ttcaaatgttgcccccttcccagtttc 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 976
Length adjustment: 10
Effective length of query: 560
Effective length of database: 966
Effective search space: 540960
Effective search space used: 540960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
