Query= MSMg01no508_c01.b1 MSMg01no508_c01.b1 CHROMAT_FILE:
MSMg01no508_c01.b1 PHD_FILE: MSMg01no508_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:56 2005
(563 letters)
>mm_chr1_122580438_122581400
Length = 963
Score = 627 bits (324), Expect = 0.0
Identities = 342/348 (98%)
Strand = Plus / Minus
Query: 216 cttcttagctgctgaactatctcaccaggtcctctgagctacagtttttaaacatttcta 275
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 963 cttcttagctgctgaactatctcaccaggtcccctgagctacagtttttaaacatttcta 904
Query: 276 atcctttgtctctgaaatgaaatatgaagatgccattagaactcatgggtttgtttggtt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 atcctttgtctctgaaatgaaatatgaagatgccattagaactcatgggtttgtttggtt 844
Query: 336 ggtttggtttggggattggagatctgatccaggacccagtgcatgctaaactgttgctca 395
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 843 ggtttggtttggggattggagatctgatccaggacccagtgcatgctaaaccgttgctca 784
Query: 396 accactgaactgcatacctacactctgcttcttaatggcaggctggcacctcagggttcc 455
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 783 accactgaactgcatacctacactctgcttcttaatggcaggctggcgcctcagggttcc 724
Query: 456 agctgtgtggggcaatccacttgggtctgagttaagcatgaggctttgcctaccatggga 515
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ggctgtgtggggcaatccacttgggtctgagttaagcatgaggctttgcctaccatggga 664
Query: 516 aagcaaagaggtgctacactggtcccgttcatattagcagagagctgt 563
||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 663 aagaaaagaggtgctaaactggtcccgttcatattagcagagagctgt 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_c01.g1 MSMg01no508_c01.g1 CHROMAT_FILE:
MSMg01no508_c01.g1 PHD_FILE: MSMg01no508_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:56 2005
(662 letters)
>mm_chr1_122388876_122389937
Length = 1062
Score = 998 bits (516), Expect = 0.0
Identities = 650/762 (85%), Gaps = 104/762 (13%)
Strand = Plus / Plus
Query: 1 tatgcttttcccagccccaagtagccatcaaatgagcctttgtgggctttgaccaagcta 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgcttttcccagccccgagtagccatcaaatgagcctttgtgggctttgaccaagcta 260
Query: 61 ggcaagccatgaagtaagggagcaagatagtagcataatgaatgggagtctgggcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaagccatgaagtaagggagcaagatagtagcataatgaatgggagtctgggcttctc 320
Query: 121 agtgctggctcccagcagcactgcttaggtcttataaatgggagctgcagttcccagaaa 180
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 321 agtgctggctcccagcagcactgcctaggtcttgtaaatgggagctgcagttcccagaaa 380
Query: 181 tgagccacactatggtaagattctaccaggctgatgaacaattaaagtgtgcatgattgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagccacactatggtaagattctaccaggctgatgaacaattaaagtgtgcatgattgt 440
Query: 241 ggagagtaggaacgttgcaggtccagagccaaattatcctgaattatctttagcccctta 300
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 agagagtaggaacattgcaggtccagagccaaattatcctggattatctttagcccctta 500
Query: 301 atagccatttattaaccatttctgtgttttgtctaa------------------------ 336
||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagccatttattaaccatttctgtgttttgtctaacatcctcgtgaccattaggtaaaa 560
Query: 336 ------------------------------------------------------------ 336
Sbjct: 561 tctgtctggaatggactaatagaccccttagcatctgtcaacccaaaggctaagaacgtc 620
Query: 337 ----------------ggcctaatgcggtagttttcaatacctgcttgatgttcccacca 380
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 atcagatagcatctaaggcctaatgcggtagttttcgatacctgcttgatgttcccacca 680
Query: 381 atgtattttttaagtgccttaatttatgattttcttttgttctgttactatcaaaatttc 440
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtattttt-aagtgccttaatttatgattttcttttgttctgttactatcaaaatttc 739
Query: 441 aggaaacctatcaaaccaaaacaggctttgtaaggtaacctgagtccatgtacctgggct 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aggaaacctatcaaaccaaaacaggctttgtaaggtaacctgagtccatgtacctgggct 799
Query: 501 accgccatttatatttggtttcagaataaacagtcttttattccctttgagatgagagtt 560
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atcgccatttatatttggtttcagaataaacagtcttttattccctttgagatgagagtt 859
Query: 561 gtgtcaacagcacacagcactgctgtcattacagccctctgggagagccaagcctaacac 620
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 860 gtgtcaacagcacacagcactg---tcattacagccctctgggagagccaagcctaacac 916
Query: 621 atgagacatgagacatgagacctgtaccaacaccaagctaat 662
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 atgagacatgagacatgagacctgtaccaacaccaagctaat 958
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
