Query= MSMg01no508_f08.b1 MSMg01no508_f08.b1 CHROMAT_FILE:
MSMg01no508_f08.b1 PHD_FILE: MSMg01no508_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:12 2005
(589 letters)
>mm_chr1_166341868_166342856
Length = 989
Score = 1058 bits (547), Expect = 0.0
Identities = 580/601 (96%), Gaps = 16/601 (2%)
Strand = Plus / Plus
Query: 5 gaattcaaccacctaccagctaccagacagaatctggacgtctcatcttgtcaatagcaa 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaccacccaggagctaccagacagaatctggacgtctcatcttgtcaatagcaa 264
Query: 65 agtcagcttctgtctttgaattaagaataatttaatttaagaaagtgttatttatctgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtcagcttctgtctttgaattaagaataatttaatttaagaaagtgttatttatctgtt 324
Query: 125 ttaaaatacaatgagaaaaatgcttacttgatatagtgattcactaaggtcttgttgtgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaaaatacaatgagaaaaatgcttacttgatatagtgattcactaaggtcttgttgtgg 384
Query: 185 ctactttatttatttatttatttatttattt----------------ttggtttttcgag 228
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 ctactttatttatttatttatttatttatttatttatttatttatttttggtttttcgag 444
Query: 229 acagggtttctctgtatagccctggctgtcctggagctcactttgtagaccaggctggcc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagggtttctctgtatagccctggctgtcctggagctcactttgtagaccaggctggcc 504
Query: 289 tcgaactcagaaatttgcctgcctctgcctcccgagtgctgggattaaaggtgtgcgcta 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 tcgaactcagaaatttgcctgcctctgcctcccgagtgctgggattaaaggtgtgcgcca 564
Query: 349 ccacgcccggctactttatttatttttatcttatgatgagtatattgcttatggtacaca 408
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccatgcccggctactttatttatttttatcttatgatgagtatattgcttatggtacaca 624
Query: 409 caagtatactgtgtgagcacagtacccatgaaggccagaagagagtgccagaccccttgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caagtatactgtgtgagcacagtacccatgaaggccagaagagagtgccagaccccttgg 684
Query: 469 agcagaagatgtgaactaccatgcgaatactaggaactgagccagggtcctctgaaagag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agcagaagatgtgaactaccatgcgaatactaggaactgagccagggtcctctgaaagag 744
Query: 529 caccaagtgctttcagccataaagacatctcttcagacctttgtgactgcttttaaaaat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caccaagtgctttcagccataaagacatctcttcagacctttgtgactgcttttaaaaat 804
Query: 589 t 589
|
Sbjct: 805 t 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_f08.g1 MSMg01no508_f08.g1 CHROMAT_FILE:
MSMg01no508_f08.g1 PHD_FILE: MSMg01no508_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:12 2005
(564 letters)
>mm_chr1_166496075_166497036
Length = 962
Score = 946 bits (489), Expect = 0.0
Identities = 525/537 (97%), Gaps = 3/537 (0%)
Strand = Plus / Minus
Query: 29 ccattaagagatgttggctaaagaaaacacacagacacattcatgccacacacatccaaa 88
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 962 ccattaagagatgttggctaaagaaaacacacagacacatttatgccacacacatccaaa 903
Query: 89 cacacacatatatacgtgcaattgtatatatgagacatacatacatttgcatgggtagaa 148
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 902 cacacacatatatacgtgcaattgtatatatgagacatgcatacatttgcatgggtagaa 843
Query: 149 ctgtatatcatcatggtaaatgaaataatccaaacctaggaagacaaggattacattttc 208
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 842 ctgtatatcatcatggtaaatgaaataatccaaacctaggaagacaagggttacattttc 783
Query: 209 tctcaatatgtggaa-ttatatttaagtggagggggacaggaaggaatttaatgtagtca 267
||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 782 tctcaatatgtggaatttacatttaagtggagggggacaggaagaaatttaatgtagtca 723
Query: 268 agagattcttggattagggaggatattgccttagaacccagagcccatgtcaaggaactc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 722 agagattcttggattagggaggatattgccttagaacccagagcccatgtcaaagaactc 663
Query: 328 agaggcacaaagggctcttggaaggatggagaggaagaacatgggaataatgaacagaga 387
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 662 agaggcacaaagggctcttggaagggtggagagaaagaacatgggaataatgaacagaga 603
Query: 388 gagtatatactgagtgccatttttatcaccaagggtgggtgactcttatttataattttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gagtatatactgagtgccatttttatcaccaagggtgggtgactcttatttataattttc 543
Query: 448 ttttctctggtctgaatattttaagaggccttttccttatttgaggaggaatcataaaca 507
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 542 ttttctctggtctgaatattttaagaggccttttcc-tatttgaggaggaatcgtaaaca 484
Query: 508 cgcattttctccaagtcaaacatcccagtgatttatatgcttgtgggtagctgctgc 564
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 483 cgcattttctccaagtcaaacatcccagtga-ttatatgcttgtgggtagctgctgc 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 962
Length adjustment: 10
Effective length of query: 554
Effective length of database: 952
Effective search space: 527408
Effective search space used: 527408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
