BAC Information

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BAC

Clone NameMSMg01-508I19
Chromosome1 (Build37)
Map Location 90,162,089 - 90,162,789
singlet/doubletsinglet
Overlap gene6430706D22Rik, LOC100038822
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508I19.T7 (MSMg01no508_i19.b1)MSMg01-508I19.TJ (MSMg01no508_i19.g1)
ACCAG582437AG582438
length755776
length of high quality
(start - end)
705 (49 - 753)524 (130 - 653)
definitionCHROMAT_FILE: MSMg01no508_i19.b1 PHD_FILE: MSMg01no508_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:29 2005CHROMAT_FILE: MSMg01no508_i19.g1 PHD_FILE: MSMg01no508_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTTTATGCTCATCATAGTTATCCTTCCCACAGCCTGGAGA
GCCTATGCATGGTGCTGAAATAGCTGTACTGGGCCACACTGCCTTACCAG
TAGGTTCAGAATTGTGCTCTTGAAGGCCAGAGCTCAGCTGAGAATGGCTG
GGGCTCCGTGACGGGCTGCCCTCTGGAGAGGGACAGCTCCTTAGAAGACA
GCTCTTTGTTTTGACAGACTTTCCATTTCCCCTCAGGTCTTCTAAAGCTT
CACCTGGCCTTTCTGTCTTTTCTCTGCCGAAAGGTGAACTGGGCCTGCAG
GTTTCTACATCCTGACGGCTGCCTGGGCTCTTAGAACCACTTCTGTACAC
ATCGACAGCCCAAGACTCTGTGGGGTCAGTCAGGCGAGGCTGTTTCCCAG
AAGACAGGCAATATTCCTGATGAAGCTTGTCAAATTTGATTTTAATCTCT
CTATACCACTTCTCTACTGGACTTGGAAGCATCCTTGGTCTGGGAACCAC
CTTGACGGGTGAAATTAGCCACTGTAATGTCATCACCCTATTTTCTCGCT
CACGGTTTAAGTCCAAGTCCTTCTGCGGCATCATCTGGAGCTCCTTCCAA
GCTGGACTGGATTTATGGACTTGGCGTTTGCTTCCCTTCAGAGAAACGCT
TTTCAGTTCTAAGCCTGTCTTGTGGGGAGCAACGTGCAGTAAATTCCCGT
AGTCT
NNCCGATGATAGTGGGTATCCTGGNGGNNGCCCGGTTTCAAAAATGGGGN
NGAACNANANAAGGATTCACACAATTGGTTACAGATATAATTAAGGAGAA
TATCATGATTTTATAAACTCTTATGACTGAGACTCATCAATTCAGATTCC
CAGTAACAATTGTATTCTGAGAGTGTAAATATTAGAGACATATTTGGCAA
AATATCAGGGTTCCTGTTGATTTCATATATGGAAAAGCCAAAGCCAGAGC
ATACTTGTTTTTTTCAGTATGAGTTCTGTAAAAGTTTATAGTGTTTAAAA
TTAGCAGCAATTTACAGATAACATTCGGTGCTTATAAAAGGACAATTCTC
TACTGTATTGCATTGTCCACACCCCATAAAGATAAAAAAGATATGTGTAA
TGTAGTTGACATGGCAGAGAAGCTGGAAGTTCATTAAACCTTGAAATGTT
CATGAAATATTATCTCTCAAAAATGAGATGTTACCACTATTAGTAATACC
ATCACTTTTCAAAAAACACAAACAGATCCCTTTTAGTCCATATATTGCGT
CCTTATTCTAAAGAGAGAGTAAAGAACTGTACTTTGTAAGTTGTTAATTC
CAGTTAATTTGTATTGATCAAAATATAAACTTCACAGTGGACAGCTATCT
TAGTTCAATTATTGATGCAGCATCTGTACATAAACAGGGACCAAATTGAG
GAAATTTAAGATAGTGGCTGAATATGCACAGGTAGGTATGTCTCCAATAT
CAATGACCCCCAAACATGCACTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_i19.b1 MSMg01no508_i19.b1 CHROMAT_FILE:
MSMg01no508_i19.b1 PHD_FILE: MSMg01no508_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:29 2005
         (705 letters)



>mm_chr1_90161885_90162989
          Length = 1105

 Score = 1319 bits (682), Expect = 0.0
 Identities = 697/702 (99%), Gaps = 2/702 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttttatgctcatcatagttatccttcccacagcctggagagcctatgcatgg 64
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcttttttaagctcatcatagttatccttcccacagcctggagagcctatgcttgg 264

                                                                       
Query: 65  tgctgaaatagctgtactgggccacactgccttaccagtaggttcagaattgtgctcttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctgaaatagctgtactgggccacactgccttaccagtaggttcagaattgtgctcttg 324

                                                                       
Query: 125 aaggccagagctcagctgagaatggctggggctccgtgacgggctgccctctggagaggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaggccagagctcagctgagaatggctggggctccgtgacgggctgccctctggagaggg 384

                                                                       
Query: 185 acagctccttagaagacagctctttgttttgacagactttccatttcccctcaggtcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagctccttagaagacagctctttgttttgacagactttccatttcccctcaggtcttc 444

                                                                       
Query: 245 taaagcttcacctggcctttctgtcttttctctgccgaaaggtgaactgggcctgcaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaagcttcacctggcctttctgtcttttctctgccgaaaggtgaactgggcctgcaggt 504

                                                                       
Query: 305 ttctacatcctgacggctgcctgggctcttagaaccacttctgtacacatcgacagccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctacatcctgacggctgcctgggctcttagaaccacttctgtacacatcgacagccca 564

                                                                       
Query: 365 agactctgtggggtcagtcaggcgaggctgtttcccagaagacaggcaatattcctgatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agactctgtggggtcagtcaggcgaggctgtttcccagaagacaggcaatattcctgatg 624

                                                                       
Query: 425 aagcttgtcaaatttgattttaatctctctataccacttctctactggacttggaagcat 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 aagcttgtcaaatttgattttaatctctctataccacttctctacttgacttggaagcat 684

                                                                       
Query: 485 ccttggtctgggaaccaccttgacgggtgaaattagccactgtaatgtcatcaccctatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccttggtctgggaaccaccttgacgggtgaaattagccactgtaatgtcatcaccctatt 744

                                                                       
Query: 545 ttctcgctcacggtttaagtccaagtccttctgcggcatcatctggagctccttccaagc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttctcgctcacggtttaagtccaagtccttctgcggcatcatctggagctccttccaagc 804

                                                                       
Query: 605 tggactggatttatggacttggcgtttgcttcccttca-gagaaacgcttttcagttcta 663
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 805 tggactggatttatggacttggcgtttgcttcc-ttcaagagaaacgcttttcagttcta 863

                                                     
Query: 664 agcctgtcttgtggggagcaacgtgcagtaaattcccgtagt 705
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 agcctgtcttgtggggagcaacgtgcagtaaattcccgtagt 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)