NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGGAT
CCGCGGAATTCATTGTTTTCCGACTGGTACATTAACCCCAACCTTCTCAA
ACATTCACCTATTATATTCTGAGTATGATTGTTACTTACTAGGTGTTTCC
ATGTGCTTTCTTAAGGCATAATCATCAATCATAGAAAACATAGTTTCCAA
AAAATGCGTTCTGTCCCAAATGGCCATTGTTATACTTTTCATAAATCATC
CCAAATGGAATATACCTCATACTGCAATCCAAAGTCGTTATCCAAGTTTG
AATTGTATAGTCAGTCTTCAGTACAATGATAGCTTCTTCCCAGTGAATTT
CAGTCATATAGCAATTAGATGATTTTATACTGTCAAAAGCCTCCATGCTT
TCTTTTGCAATATGTCAAGGTCAGTTTCTCAATTATTTTCTTTCCTTACT
GGGTCATTATTCAAATAGCAGTACTCACATGCAACTAAAGCAATAGGAGG
CCTAAATCCCATATGATCTAATTATAAAAAATATTGGCCAAAACTTGGCC
AGCTATTATGGTAAGTTTACACTCTGACCTGAGGAAAACATTATTGTTAA
GATGTTATTTTCATGGCCGATGAGAAATGAGATGCATCTTTTTTTTTTTT
TTTTTAGCTAATTGAGAATGGAGAAATGCTTGAATGGTCTTGTCAAATGA
CTGATATCTATTGGGATTCATTTTCCAGTCTGAAAGAAGCTTAATAATAT
A

NNGGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACTCAA
TTTTTTAATAGGGTTATTTGGTTTTCTGGAGTCCAACTTCTTGAGTTCTT
TTTATATATTGAATAGAAGCCCCCTATCAGATTTAGGATTGGTAAAGATC
TTTTTTCCAATTGGTTGGTTGACGTTTTGTCTAATTTACAGTGTCCTTTG
CTTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCGATTCTCGAT
CTTATTGCACAAGCCATTGCTGTTCTATTCAGGAACTTTTCCCCTGTACC
CATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCT
CTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAA
GGAGATAGGAATGGATCAATTCGCATTCTTCTACGTGATAACCACCAGTT
GTGCCAGCACCATTTGTTGAAAGTGCTGTCTTTTTTCCACTGGATGGTTT
TAGATCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGAGTTCATCTCT
GGGTCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTTGCTATACCAGTA
CCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTCAGGCA
TGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATC
CTAG

Query= MSMg01no509_a06.b1 MSMg01no509_a06.b1 CHROMAT_FILE:
MSMg01no509_a06.b1 PHD_FILE: MSMg01no509_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:07 2005
         (650 letters)



>mm_chr1_96348324_96349373
          Length = 1050

 Score = 1212 bits (627), Expect = 0.0
 Identities = 649/667 (97%), Gaps = 17/667 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacattaaccccaaccttctcaaacattcacctattatattctgagtatgattgttactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacattaaccccaaccttctcaaacattcacctattatattctgagtatgattgttactt 260

                                                                       
Query: 61  actaggtgtttccatgtgctttcttaaggcataatcatcaatcatagaaaacatagtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaggtgtttccatgtgctttcttaaggcataatcatcaatcatagaaaacatagtttc 320

                                                                       
Query: 121 caaaaaatgcgttctgtcccaaatggccattgttatacttttcataaatcatcccaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaaaatgcgttctgtcccaaatggccattgttatacttttcataaatcatcccaaatg 380

                                                                       
Query: 181 gaatatacctcatactgcaatccaaagtcgttatccaagtttgaattgtatagtcagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatatacctcatactgcaatccaaagtcgttatccaagtttgaattgtatagtcagtct 440

                                                                       
Query: 241 tcagtacaatgatagcttcttcccagtgaatttcagtcatatagcaattagatgatttta 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tcagtacaatgatagcttcttcccagtgaatttcagtcatctagcaattagatgatttta 500

                                                                       
Query: 301 tactgtcaaaagcctccatgctttcttttgcaatatgtcaaggtcagtttctcaattatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactgtcaaaagcctccatgctttcttttgcaatatgtcaaggtcagtttctcaattatt 560

                                                                       
Query: 361 ttctttccttactgggtcattattcaaatagcagtactcacatgcaactaaagcaatagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctttccttactgggtcattattcaaatagcagtactcacatgcaactaaagcaatagg 620

                                                                       
Query: 421 aggcctaaatcccatatgatctaattataaaaaatattggccaaaacttggccagctatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcctaaatcccatatgatctaattataaaaaatattggccaaaacttggccagctatt 680

                                                                       
Query: 481 atggtaagtttacactctgacctgaggaaaacattattgttaagatgttattttcatggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggtaagtttacactctgacctgaggaaaacattattgttaagatgttattttcatggc 740

                                                                       
Query: 541 cgatgagaaatgagatgcatcttttttttttttttttt-----------------agcta 583
           ||||||||||||||||||||||||||||||||||||||                 |||||
Sbjct: 741 cgatgagaaatgagatgcatcttttttttttttttttttttttttttttttttttagcta 800

                                                                       
Query: 584 attgagaatggagaaatgcttgaatggtcttgtcaaatgactgatatctattgggattca 643
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attgagaatggagaaatgcttgaatggtcttgtcaaatgactgatatctattgggattca 860

                  
Query: 644 ttttcca 650
           |||||||
Sbjct: 861 ttttcca 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)