Query= MSMg01no509_d18.b1 MSMg01no509_d18.b1 CHROMAT_FILE:
MSMg01no509_d18.b1 PHD_FILE: MSMg01no509_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:25 2005
(692 letters)
>mm_chr1_168369788_168370879
Length = 1092
Score = 397 bits (205), Expect = e-114
Identities = 205/205 (100%)
Strand = Plus / Minus
Query: 488 acattcgtttccttgatgtgttcctagtccttcactatctaagggtgtaaatgaggaaac 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 acattcgtttccttgatgtgttcctagtccttcactatctaagggtgtaaatgaggaaac 833
Query: 548 cacgtttgagatcagtgagaagactggcctgtccaggaaagtaattggtgtgagtactaa 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 cacgtttgagatcagtgagaagactggcctgtccaggaaagtaattggtgtgagtactaa 773
Query: 608 aggggctatcagaccgccatcattgcaaggttacaccatcatcgataagggtgcacacgg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aggggctatcagaccgccatcattgcaaggttacaccatcatcgataagggtgcacacgg 713
Query: 668 aagcagagttacagacagcttttca 692
|||||||||||||||||||||||||
Sbjct: 712 aagcagagttacagacagcttttca 688
Score = 211 bits (109), Expect = 2e-58
Identities = 121/125 (96%)
Strand = Plus / Minus
Query: 10 atatatacatacccataaaacgttagaatacacgatgatgaaagcaaaagccatgcttta 69
||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 1003 atatatatatacccataaaacattaggatacacgatgatgaaagcaaaagccatgcttta 944
Query: 70 gaagaccagcaagagaaggtggaatgttcgtaaatggaaactgaggaaaggacatttgtt 129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 943 gaagaccagcaagagaaggtggaatgttcgtaaatggaaactgaggaaaggacattcgtt 884
Query: 130 tcctt 134
|||||
Sbjct: 883 tcctt 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_d18.g1 MSMg01no509_d18.g1 CHROMAT_FILE:
MSMg01no509_d18.g1 PHD_FILE: MSMg01no509_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:25 2005
(690 letters)
>mm_chr1_168363955_168365044
Length = 1090
Score = 1319 bits (682), Expect = 0.0
Identities = 688/690 (99%)
Strand = Plus / Plus
Query: 1 tcagaagctgcacagcaatattgttatctttgagaggaaaaaatagaagataaggtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaagctgcacagcaatattgttatctttgagaggaaaaaatagaagataaggtcaaa 260
Query: 61 ccccagagagaaatatgccttctgagaattctgagcctcttggtgactgagctttttcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccagagagaaatatgccttctgagaattctgagcctcttggtgactgagctttttcag 320
Query: 121 ggcattgatgtggtggtgctaagaaggctgctaatgggtacctcagcacccaaaggtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcattgatgtggtggtgctaagaaggctgctaatgggtacctcagcacccaaaggtgtg 380
Query: 181 aactcactgaggtcacaagcagtacagcagcagtggcatagcagacaacccatgccagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcactgaggtcacaagcagtacagcagcagtggcatagcagacaacccatgccagct 440
Query: 241 tctcatttctcctgtcccacctccccctgcctcataagatggctttgctataactagtag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcatttctcctgtcccacctccccctgcctcataagatggctttgctataactagtag 500
Query: 301 atacaacaaacttaaaggcacagataatcagaccactattacatttaacgtactttaaaa 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcaacaaacttaaaggcacagataatcagaccactattacatttaacgtactttaaaa 560
Query: 361 aaacctttaaattctttgtgaatttcacatcacacaccccaaccccactcatctctgtag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacctttaaattctttgtgaatttcacatcacacaccccaaccccactcatctctgtag 620
Query: 421 agtgaatatcttgtgattgtatggatgtatcacttgtatccatacatattaaaaagtatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgaatatcttgtgattgtatggatgtatcacttgtatccatacatattaaaaagtatg 680
Query: 481 gcctatggcttaggctgaaaatagaaggtgggccactcagaaggagaaagaattctggga 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 gcctatggcttaggctgaaaatagaaggtgggccactcagaaggagaaagaattctggaa 740
Query: 541 tagagccaggcacggtaagatcatcctgggaagttgtgaggagatggatacatagtacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagagccaggcacggtaagatcatcctgggaagttgtgaggagatggatacatagtacct 800
Query: 601 gagcacaggaaaccagccacatggcagaattgaagttaaaacaaatgcattaatttatga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagcacaggaaaccagccacatggcagaattgaagttaaaacaaatgcattaatttatga 860
Query: 661 ttctagtcagaagagagcctttctatatgg 690
||||||||||||||||||||||||||||||
Sbjct: 861 ttctagtcagaagagagcctttctatatgg 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
