Query= MSMg01no509_e05.b1 MSMg01no509_e05.b1 CHROMAT_FILE:
MSMg01no509_e05.b1 PHD_FILE: MSMg01no509_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:27 2005
(619 letters)
>mm_chr1_187813611_187814630
Length = 1020
Score = 1094 bits (566), Expect = 0.0
Identities = 599/616 (97%), Gaps = 13/616 (2%)
Strand = Plus / Plus
Query: 5 gaattctcccatttctggggtgcttactgtgtatacatttagatagctcaatagaatatc 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctcccatttctggggtgcttactgtgtatacatttagatagcttaatagaatatc 264
Query: 65 -gataagtcagtgatgtcaccatgatcacaaatgatgcactgacccctttatgtcataat 123
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 agataagtcagtgatgtcaccatgatcacaaatgatgcactgacccttttatgtcataat 324
Query: 124 tctttgacttacctccaacacacacacacacacacacacacacacacacacacacacaca 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctttgacttacctccaacacacacacacacacacacacacacacacacacacacacac- 383
Query: 184 ctatgcatgcacactctcacaatacaacacatcacatgtacacacaaatgcacacataca 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 -tatgcatgcacactctcacaatacaacacatcacatgtacacacaaatgcacacataca 442
Query: 244 catatacttgcacatatacatcacataatatgtacctatacacactcattcatacacata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catatacttgcacatatacatcacataatatgtacctatacacactcattcatacacata 502
Query: 304 taaactcacacatatgcacacatgtactcacatatacatacacagatacacacatgtaca 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taaactcatacatatgcacacatgtactcacatatacatacacagatacacacatgtaca 562
Query: 364 taggcatatactctcacccacttatacacacacacattcacaaatatataaactcacata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 taggcatatactctcacccacttatacacacacacattcacaaatatataaactcacata 622
Query: 424 cacacatgcattcacatatacatactcacacatatacatgtacacatatgcatacactca 483
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 623 cacacatgcattcacatatacatac----acatatacatgtacacatatgcatacactca 678
Query: 484 cacatatacattcacatacatacacattcatatatattcattcacatgcatacacacaca 543
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 679 cacatatacattcacatacatacacattcatatatattcatttacatgcatacacacaca 738
Query: 544 cacacacacacatacatacacacacacacacaaactttggggggactcatctttaatttt 603
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cacacacacaca------cacacacacacacaaactttggggggactcatctttaatttt 792
Query: 604 ggttgtcatctctatc 619
||||||||||||||||
Sbjct: 793 ggttgtcatctctatc 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 167
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 9
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_e05.g1 MSMg01no509_e05.g1 CHROMAT_FILE:
MSMg01no509_e05.g1 PHD_FILE: MSMg01no509_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:27 2005
(584 letters)
>mm_chr1_187831547_187832531
Length = 985
Score = 731 bits (378), Expect = 0.0
Identities = 417/430 (96%), Gaps = 1/430 (0%)
Strand = Plus / Minus
Query: 156 tgctgctttgtcagaataacaatatcctttgcctctaagtaacttcttaatttcatgcaa 215
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 985 tgctgctttgtcacaataacaatgtcctttgcctctaagtaacttcttaatttcatgcaa 926
Query: 216 tttcatttattaattgttgatcttggtacccgtgttaatggtgttctgttgagaaagaat 275
||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 925 ttttatttattaattgttgatcttggtaccagtgttaatgatgttctgttgagaaagaat 866
Query: 276 tttcctgtgccaatgagttcaagctattctccactttctcttctatcaggctcagtatat 335
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tttcctgtgccaatgagttgaagctattctccactttctcttctatcaggctcagtatat 806
Query: 336 cgaggcttatgttgaggtctcattgtgtggtgaccttgctcaaaccagtcttgattccct 395
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 805 cgaggcttatgttgaggtctcattgtgtggtgaccttgctcaaaccagtctttattccct 746
Query: 396 cgtagattcagtgacattatttggcttctcactgttgtgcttggtgcctctgtgacaacc 455
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 745 cgtagattcagtgacattatttggcctctcactattgtgcttggtgcctctgtgacaacc 686
Query: 456 cagggtctgttccattctccacacaccacagctgtcacttggtgatggctctttggattt 515
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caggatctggtccattctccacacaccacagctgtcacttggtgatggctctttggattt 626
Query: 516 ctgcctcacttatgttcactgcacatttttt-aaaatcttaaccctctatgactttctat 574
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 625 ctgcctcacttatgttcactgcacatttttttaaaatcttaaccctctatgactttatat 566
Query: 575 ttgtgaacac 584
||||||||||
Sbjct: 565 ttgtgaacac 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 985
Length adjustment: 10
Effective length of query: 574
Effective length of database: 975
Effective search space: 559650
Effective search space used: 559650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
