TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAAAGATTTCACTACAAGCAGTCTCTTGGATTGCTTAAGGGCATTT
GCGAGTCTTGAGGTTACAAGTGCAAAGATACTTTTATGCCCAAACCTTTT
ATATCTACACAAAATCCCTGTTGATTTGTGAGGGCTAAAGATGTAACTTA
CTGGCTAAGACAGAGCAAAGCAAAATATTCTAGGGGCAAAATAGCACTTG
CCTTTGGTTCCTAGTACTCTGGGGACTCTGGGGAGGGGACCTACATTAGT
TCTAGGTTTGTACTTTTGGAGGAATAAACATGTGTGACATGGGGTTTCTA
AACTATCTCCTACTAGATGTCATTAAAAATATATAAGGTGGGTCTTGGTT
AGGGTTAGTATTGCTATTAATGAAACACCATGACCAAAACTTGGGAAGGA
AAGAGTTTATTTGGCTTATACTTCCATGTCACTGTTCATCCTCAAAGAAG
TCAGCAGCAGGCAGGGCAGGAACCTGGAGGCAGGAGCTGATACACGGGCT
GGGGGGGGGGGGGCGGCTGGGGAGGTTGCTGCTTACTTACCTCTCATGAC
TTGCTCAGCCTGTTTTCTTATAGAACCCAGAGCCACCAGCCCAGGGATGG
CACCACCCACAATGGGCTTGGGCCCCGCCCTCATTGATCTCTAGTTAAGG
TAAAGCCCTATAGGCTTGCCTACAGCCCAATCTGATGGAGGCATTTTCTC
CTTTGAAGCACTCTCCTCTCTGATGACTCTAGCCTGG

ATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAAAAAAGAAACAAGAAAAAAATTCTT
GCCAGGGAGGGTGGTGAAAATGCCTTTAGTCCTAGCACTTGGAAGGTGGA
GGCAGGCGTGTGAGTTTGAGGCCATTCTGGTCTATTGAGAGAATTTCAAG
ATAGCCAGGGCTACACAGAGAAACCCTGTCTTGGAAAGAAGAAGGGAAGG
AACGATGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGANNNTTNNNNTNN
NNNNNNNNNNNNNNTNNTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTTNCCCCCCCCCCCTTTTTTTTTTCCTCCCTTTTTTTTTTC
TTCTTTCTTCCTTTTTTTCTCTTCCTCTTTCCTTCTCTTTCTCTTCCCTT
TTTCTTCCCTTTCTTTCCCTCTTTTTTCTCTTCCCCTTCTCTTTCTTCTT
TTCCCCTCCCCTTCTTTTTCCCTTTTCTTTTTCCTCTTTTTTTTCTCTTC
CCCCTTTCTTCCCTTTTTTTTTTTCTTCTTCTCTCTTTTTTTTTCCCCTC
CTCCTTTCCCCCCTTTTCTCTTCCCCTCTCTTTTTTTTTTCTTTTTCTTC
TCTCTCCCCCCCCCTTCCTTCCTTCTTTTTTTTTTTCTCTTCCTTCTCTC
TCTCCNTTTCCTTTTTCTCCTCTCTTTTTTTCCCCCTTCTTCTCTCTCTT
TCTCCTTTCTTTTCTCTTTCCN

Query= MSMg01no509_j23.b1 MSMg01no509_j23.b1 CHROMAT_FILE:
MSMg01no509_j23.b1 PHD_FILE: MSMg01no509_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:54 2005
         (635 letters)



>mm_chr1_183966828_183967862
          Length = 1035

 Score =  959 bits (496), Expect = 0.0
 Identities = 532/548 (97%), Gaps = 9/548 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaaagatttcactacaagcagtctcttggattgcttaagggcatttgcgagtc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaattctcaaagatgtcactacaagcagtctcttggattgcttaagggcatttgcgagtc 489

                                                                       
Query: 65  ttgaggttacaagtgcaaagatacttttatgcccaaaccttttatatctacacaaaatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttgaggttacaagtgcaaagatacttttatgcccaaaccttttatatctacacaaaatcc 429

                                                                       
Query: 125 ctgttgatttgtgagggctaaagatgtaacttactggctaagacagagcaaagcaaaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctgttgatttgtgagggctaaagatgtaacttactggctaagacagagcaaagcaaaata 369

                                                                       
Query: 185 ttctaggggcaaaatagcacttgcctttggttcctagtactctggggactctggggaggg 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttctaggggcataatagcacttgcctttggttcctagtactctggggactctggggaggg 309

                                                                       
Query: 245 gacctacattagttctaggtttgtacttttggaggaataaacatgtgtgacatggggttt 304
           |||||||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 308 gacctacattggttctaagtttgtacttttggaggaaaaaacatgtgcgacatggggttt 249

                                                                       
Query: 305 ctaaactatctcctactagatgtcattaaaaatatataaggtgggtcttggttagggtta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctaaactatctcctactagatgtcattaaaaatatataaggtgggtcttggttagggtta 189

                                                                       
Query: 365 gtattgctattaatgaaacaccatgaccaaaacttgggaaggaaagagtttatttggctt 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 188 gtattgctattaatgaaacaccatgaccaaaacttgggaaggaaagggtttatttggctt 129

                                                                       
Query: 425 atacttccatgtcactgttcatcctcaaagaagtcagcagcaggcagggcaggaacctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atacttccatgtcactgttcatcctcaaagaagtcagcagcaggcagggcaggaacctgg 69

                                                                       
Query: 485 aggcaggagctgatacacgggctgggggggggggggcggctggggagg------ttgctg 538
           |||||||||||||||||||||||||||||||||||  |||||||| ||      ||||||
Sbjct: 68  aggcaggagctgatacacgggctgggggggggggg--ggctgggg-ggcggggcttgctg 12

                   
Query: 539 cttactta 546
           ||||||||
Sbjct: 11  cttactta 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)