TATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAGAAATCCGCGGAAT
TCTCAAAACTATCTTAAAATCCTGTATCCCAGTGCACCAGGTTCAGGGAA
AGGGCAGCATTTATGATGCTACCCACTCTTTCCCTCCTTCCTTCTTTCCT
TCTCCCACCCCTCTCTCTTTCACTTCTTCCTTTCTCTGTCCAAATCTGTA
CTATGAACCTTCTGGTCGACTCATATCTCACTGTGGATGCAAAACTTATA
AAAAGACATTCATTGAAACCTCCAAGGACATCATTTATTCATGTAATCTT
TATTCCCAGAGTGTATAATGCTTGGTGAACAGGAAAGAAAATTTCATATA
AAGCAAGTCAGGAACATTTACAAAAGAAAGACAGAAGTTACAATATTGAC
ACAGGGGAATGAACGCCCTACCACCTTTTCAGAAATGCCTTTCAAAGACA
AATACAGTAACACTGAACCTGAGTCCAGGGTAGGTGGGATGCAGACAGTT
CTGCAATCACTCATATGTAGGGAGCATAGAGTGCAATGATATATGCACAA
CCACAGTACCTGAAGAAACTTGCCACATCTCATGTATAATCCACTGCCTT
CACAAGAGCTTTTCAACAGCTGTTTGGCTTCTAACCTGTTCATGAAATTT
GAACTTTGGAGATAATCAATATTCATTCTCTCATAATACAAAGAGTCAAG
GTTTTTGTCGCCATCTCATGTAGGAGAAATATTCTGTACAAAATTTTAAT
GATTTACTGCTGAGTTCCCAAGG

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAAGCTCACAAACTCTTGCACAGA
AGAGTACAATGACAAGTTTTAAAGCTGTATCAACCAGGCAATCAAAGGCA
AGTTGTTTTCATTAGTAAAGATAGAGATGCCATGTTTTTGACTAAATATA
GCTCAAATTATTCTTCTCAAAGCATGTCCTTGTCTTGCAGTCATCTCAAA
AACAGTGAGTAGTGTTTTTATTGTTATATAAATACTAGAGCTGTAGGCGA
ATCACAGAAAGCTGAGCACTGTATTTCTGGGCCCTCATGTGTTTCTATAA
CCAAAATGTATAAGAATTAAAAGAAGAGATCACAATGTAGGGAAGAATAA
GATATCTTGAATTATTCCCTCTAAGGTATATGTATGAGAAAGAGTATAAT
ACAATTTATATTGTACCTTGCTGGTAAAAACTTCTCTATGTCCTGTTGGT
TTATTTATTGTGTCATCTAGGAAGTGTCTCTTAATAAGGAATCTTCTATC
CAATGTATAAAATGTATATTTTTCTCTCTCTCATGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTGTGTGTNTNNNNNTNNTTTTNNNNNNTTN
TTTTTNTTTTNTTTTTTTTTTTNTTTNNNTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTTTTTTTTTTTNNTTTT
TTTNTNGNNTTTTTTTTTTTTTNTTTTTTTTGTTCCCTTT

Query= MSMg01no509_m19.g1 MSMg01no509_m19.g1 CHROMAT_FILE:
MSMg01no509_m19.g1 PHD_FILE: MSMg01no509_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:10 2005
         (548 letters)



>mm_chr1_104806699_104807644
          Length = 946

 Score =  978 bits (506), Expect = 0.0
 Identities = 537/558 (96%), Gaps = 20/558 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagctcacaaactcttgcacagaagagtacaatgacaagttttaaagctgtatcaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 taaagctcacaaactcttgcacagaagagtacaatgacaagttttaaagctgtatcaacc 246

                                                                       
Query: 61  aggcaatcaaaggcaagttgttttcattagtaaagatagagatgccatgtttttgactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aggcaatcaaaggcaagttgttttcattagtaaagatagagatgccatgtttttgactaa 306

                                                                       
Query: 121 atatagctcaaattattcttctcaaagcatgtccttgtcttgcagtcatctcaaaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atatagctcaaattattcttctcaaagcatgtccttgtcttgcagtcatctcaaaaacag 366

                                                                       
Query: 181 tgagtagtgtttttattgttatataaatactagagctgtaggcgaa-------------- 226
           ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 367 tgagtagtgtttttattgttatataaatactagagctgtaggcgaagagctgtaggcgaa 426

                                                                       
Query: 227 tcacagaaagctgagcactgtatttc--tgggccctcatgtgtttctataaccaaaatgt 284
           |||||||||||||||||||| |   |  ||||||||||||||||||||||||||||||||
Sbjct: 427 tcacagaaagctgagcactg-a---ccctgggccctcatgtgtttctataaccaaaatgt 482

                                                                       
Query: 285 ataagaattaaaagaagagatcacaatgtagggaagaataagatatcttgaattattccc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ataagaattaaaagaagagatcacaatgtagggaagaataagatatcttgaattattccc 542

                                                                       
Query: 345 tctaaggtatatgtatgagaaagagtataatacaatttatattgtaccttgctggtaaaa 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tctaaggtatatgtatgagaaagagtataatacaatttatattgtaccttgctggtaaaa 602

                                                                       
Query: 405 acttctctatgtcctgttggtttatttattgtgtcatctaggaagtgtctcttaataagg 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acttctctatgtcctgttggtttatttattgtgtcatctaggaagtgtctcttaataagg 662

                                                                       
Query: 465 aatcttctatccaatgtataaaatgtatatttttctctctctcatgtgtgtgtgtgtgtg 524
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 663 aatcttctatccaatgtataaaatgtatatatttctctctctcatgtgtgtgtgtgtgtg 722

                             
Query: 525 tgtgtgtgtgtgtgtgtg 542
           ||||||||||||||||||
Sbjct: 723 tgtgtgtgtgtgtgtgtg 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 946
Length adjustment: 10
Effective length of query: 538
Effective length of database: 936
Effective search space:   503568
Effective search space used:   503568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)