CACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATGGGNGGA
ATTCTTCTGGTTTCCCGTGGGGAAAACTGGGAGAGAAGCTGGCAGCAGGG
ATGGTAATAAAATAATAATAATAATAATAATAATAATAATAATAATAATG
GTGTATAAGCTGTGCTAACTTCTGGCCTATAAGTTTTATTTGTATCAACA
TACATCTTTGGGGAGAAAGGATATCTTCACAACTTGTGTGGGGCACGGTG
ATACTGGTTTCCATGATGAACAGAAAAATTTTGTAGGAAGAGTATGTCTT
GGCAGTGGAACAATGGCATGTGCCTCTTCTTACTGGAACACTCAGGAGGC
TAAGGCAGGAAAAGGATCCTATGTCTGAGGCCAGCCTGGGCTTCATAGCA
AGACTTAAAACCTTAAGGAAACAAACAAAAATTTTGTTGGGGGCAGATTG
GATTAATGAGTCTTTGCCACCTATAAATTACCACTTCCTTTCAAATTTCA
GAGTGTTTCTATTTCAAGTTCTCAGAATATATTCTCTATGCCATTTTATT
CTGTACTGTGGGAGATACTTCAAGGACCAGTCAACAGTGAGCCAGATAGA
AGATGGCAATCTGGAAAGATGGTCTCTGTCCTTTGCTCCAAGGACCTGGA
GTCCCAAGGCTGGCATAGCACTGGTGCAAGGATCTGTTTCTTCCTGTTTC
TTTGTCACAACCAAGTTTCN

TACCCATTAAGTGAAAATCTGTCGGGTAGTACTCTCTTATTTTTTTATCT
ATTGATCGAACCCCCCACAATATTATTTGCGTCGCTTCCCTTCCTCTATC
CACTATTTTTATCCACCAGCTAAGCGCTTTGCTAAAACTTATGTCGCCTT
TAACACGCCTATTTTTCTTTCAAACACCCCCTACGTTATTCACCCCAATT
TTTTTTTTTTTCCTTTTCCTTCCACACACCTTCTTCCGCGCTCATTCCGT
TTGCATTAATTTTTCCGTCCGCGCCCTTTTCCCCCCCTACCCTGTAGGTC
CCGCCTGAAAGGCCAAAGCGGGGGGGTTGGGTCCCCTGGGGTGGGGGCGG
GCCCCAGGGGGTTTCGTCCTCGAAAACAATTGGGAGGGGNGGGAACAACN
TAANTAAGGAAAGGGGGATCTCGGCGGGGGAAAATTTCTTTTTTCAAAGG
CCTTTTCCTGGCTTTTTTTTTTTTTGGTTCCAGGCTTTTCGGGGGGGTTC
AAAACAAATCCCTTTGGGAAGGGGGGTTTTTTACCAAAAAAAAAAAGGGA
AAAAACAGGGAAGGGGGGCCCGGGGGGGGGCTTGGGGAGAAAGCCCCTTT
TTTGGGAGGGGGGCCACAACACAATTGGGGGGAGAATAATCTCCCCCCCT
TTTTTCCCAACAGGGGGATTCCCCCCCGGGGGGAAAAAACAGGCGCCAAA
AAATAAGACATCTACTTAAAAGTNAGTCGGGGGGGGGGGGGNCGGATCGT
TTCAGTTATCTCCCCACTCGCCCNTAAGGGGGAGAGTTGGGGGAGTGTNG
CGGTGGCGCAGGAGAGGATNCAGCCGAAANNAAAAAGAGGGGGGGGGGTA
GGGGGGGGGGGGACGCTACCCGTCTCCTTTTTNCATCTCGCCGCCGCGGG
GGGGGGGGGAGGGGG

Query= MSMg01no511_c13.b1 MSMg01no511_c13.b1 CHROMAT_FILE:
MSMg01no511_c13.b1 PHD_FILE: MSMg01no511_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:56 2005
         (652 letters)



>mm_chr1_73268911_73269966
          Length = 1056

 Score =  992 bits (513), Expect = 0.0
 Identities = 543/555 (97%), Gaps = 6/555 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggaaaactgggagagaagctggcagcagggatggtaataa-aataataataataataa 59
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 554 ggggagaactgggagagaagctggcagcagggatggtaataataataataataataataa 495

                                                                       
Query: 60  taataataataataataataatggtgtataagctgtgctaacttctggcctataagtttt 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 494 taataataataataataataatggtgtataagctgtgctaacttctggcctagaagtttt 435

                                                                       
Query: 120 atttgtatcaacatacatctttggggagaa----aggatatcttcacaacttgtgtgggg 175
           ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 434 atttgtatcaacatacatctttggggagaaaaacaggatatcttcacaacttgtgtgggg 375

                                                                       
Query: 176 cacggtgatactggtttccatgatgaacagaaaaattttgtaggaagagtatgtcttggc 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cacggtgatactggtttccatgatgaacagaaaaattttgtaggaagagtatgtcttggc 315

                                                                       
Query: 236 agtggaacaatggcatgtgcctcttcttactggaacactcaggaggctaaggcaggaaaa 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtggaacaatggcatgtgcctcttcttactggaacactcaggaggctaaggcaggaaaa 255

                                                                       
Query: 296 ggatcctatgtctgaggccagcctgggcttcatagcaagacttaaaaccttaaggaaaca 355
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggatcctatgtctgagtctagcctgggcttcatagcaagacttaaaaccttaaggaaaca 195

                                                                       
Query: 356 aacaaaaattttgttgggggcagattggattaatgagtctttgccacctataaattacca 415
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aacaaaaattttgtt-ggggcagattggattaatgagtctttgccacctataaattacca 136

                                                                       
Query: 416 cttcctttcaaatttcagagtgtttctatttcaagttctcagaatatattctctatgcca 475
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 135 cttcctttcaaatttcagagtgcttctatttcaagttctcagaatatattctctatgcca 76

                                                                       
Query: 476 ttttattctgtactgtgggagatacttcaaggaccagtcaacagtgagccagatagaaga 535
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 75  ttttattctgtactgtgggagatacttcagggaccagtcaacagtgagccagatagaaga 16

                          
Query: 536 tggcaatctggaaag 550
           |||||||||||||||
Sbjct: 15  tggcaatctggaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1056
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1046
Effective search space:   671532
Effective search space used:   671532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)