Query= MSMg01no511_c14.b1 MSMg01no511_c14.b1 CHROMAT_FILE:
MSMg01no511_c14.b1 PHD_FILE: MSMg01no511_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:56 2005
(549 letters)
>mm_chr1_8772912_8773860
Length = 949
Score = 963 bits (498), Expect = 0.0
Identities = 536/554 (96%), Gaps = 9/554 (1%)
Strand = Plus / Plus
Query: 5 gaattcacagagactctcaagactggataaccacttcaaggaatatggagttttagataa 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattcacagagacactaaagactggataaccacttcaaggaatatggagttttagataa 255
Query: 65 tgaagaccatgccagagagaccaaagtgagactcaggctgcatcaaagatgctgtattac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgaagaccatgccagagagaccaaagtgagactcaggctgcatcaaagatgctgtattac 315
Query: 125 actgataaacaatgaaattattgtatcatactttaaatataaaggtaacacatttttctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 actgataaacaatgaaattattgtatcatactttaaatataaaggtaacacatttttctt 375
Query: 185 agtatagaatttaaccttttaaggcttgtattatagtttgtggtatatatagtctctctg 244
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 376 agtatagaatttaaccttttaagatttgtattatagtttgtggtatatatagtctctctg 435
Query: 245 tctctctttcatattcatatatatatatattaccatgtatataatcaattctagttactc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctctctttcatattcatatatatatatattaccatgtatataatcaattctagttactc 495
Query: 305 caaagaaagataggaaagaacagtcctgaaaatctggtttccacgcctcctttttttttt 364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 caaagaaagataggaaagaacagtcctgaaaatctggtctccacgcctcctttttttttt 555
Query: 365 ttctt---------cctcactgagcattaagtcattttctgcctctgacataaaattcaa 415
|| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttttttttttttttcctcactgagcattaagtcattttctgcctctgacataaaattcaa 615
Query: 416 aactaaaactacatgcttaggatttacttaaatttccagtatgtcataacctccacttgt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 616 aactaaaactacatgcttaggatttacttaaatttccagtatgtcataacctctacttgt 675
Query: 476 gagcacatactcatgcatgcatttgcatgcacacacgcaccaaaaataaaaaataaataa 535
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gagcacatattcatgcatgcatttgcatgcacacacgcaccaaaaataaaaaataaataa 735
Query: 536 actccacctataaa 549
|||| |||||||||
Sbjct: 736 actctacctataaa 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_c14.g1 MSMg01no511_c14.g1 CHROMAT_FILE:
MSMg01no511_c14.g1 PHD_FILE: MSMg01no511_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:56 2005
(592 letters)
>mm_chr1_8932672_8933663
Length = 992
Score = 1083 bits (560), Expect = 0.0
Identities = 563/564 (99%), Gaps = 1/564 (0%)
Strand = Plus / Minus
Query: 30 taaagaaagccaggtgtggtggtgcatgcctttaatcccagcactcaggaggcagaggca 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 taaagaaagccaggtgtggtggtgcatgcctttaatcccagcactcaggaggcagaggca 933
Query: 90 ggcagatttctgagttcgaggccagcctggtctacaaagtgagttctaggacagccaggg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 ggcagatttctgagttcgaggccagcctggtctacaaagtgagttctaggacagccaggg 873
Query: 150 ctatacagagaaaccctgtcttgaaaaaacaaaacaaaacaaaacaaataaaataaataa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ctatacagagaaaccctgtcttgaaaaaacaaaacaaaacaaaacaaataaaataaataa 813
Query: 210 at-aaaaaaataaaaataaagtctcatcacccatcatgcaactgtcataaaaggcaagta 268
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ataaaaaaaataaaaataaagtctcatcacccatcatgcaactgtcataaaaggcaagta 753
Query: 269 aaacactgaacatcctgagatactataaaaagacaacatcaacaaagaaggaataaaaaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaacactgaacatcctgagatactataaaaagacaacatcaacaaagaaggaataaaaaa 693
Query: 329 tcctggtggaaaagcccaacaaggaataataataacagaaaaatagttgactcatattgt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tcctggtggaaaagcccaacaaggaataataataacagaaaaatagttgactcatattgt 633
Query: 389 taaaaggcaaaaataacttttagctcaaaaacattgtagggatcagacatggatgtcaaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 taaaaggcaaaaataacttttagctcaaaaacattgtagggatcagacatggatgtcaaa 573
Query: 449 ttcacaaagagaaatgcttttgtttgggctgagattcatctttagagacttacccatgtt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttcacaaagagaaatgcttttgtttgggctgagattcatctttagagacttacccatgtt 513
Query: 509 gggtaattaactgctctaagactagtctatataacctgctatatttactcttacctaaat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gggtaattaactgctctaagactagtctatataacctgctatatttactcttacctaaat 453
Query: 569 attacctaattttacttttgtaaa 592
||||||||||||||||||||||||
Sbjct: 452 attacctaattttacttttgtaaa 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
