BAC Information

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BAC

Clone NameMSMg01-511E05
Chromosome1 (Build37)
Map Location 28,635,573 - 28,635,826
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511E05.T7 (MSMg01no511_e05.b1)MSMg01-511E05.TJ (MSMg01no511_e05.g1)
ACCAG584500AG584501
length731753
length of high quality
(start - end)
231 (45 - 275)415 (74 - 488)
definitionCHROMAT_FILE: MSMg01no511_e05.b1 PHD_FILE: MSMg01no511_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:05 2005CHROMAT_FILE: MSMg01no511_e05.g1 PHD_FILE: MSMg01no511_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAAATAATCAATAAAAATAGTATATACATAAAATAAGAAACTTTA
ATCCAGTTATTTTAACTTAACATTCTAATATAATTGTAATAACCTTCTGC
AAAAACACTGACTATGTTTTATCACTTTGTCCATTATTTAAACTCTCTCT
CTCTCTCTCTCTCTCTCTGTGTGTGTGTGGGGGGGTGTATAATATTTTGA
AGTTTATCACCAAAGGAAATCTAATCTCCCAAATTTCCATCTATAATCCT
GTCTTCAAAATTAAACTTCATACACAAAACTAACTTGAAATTTCCTTCTC
TCTTGCTGAAAGAGTTGCTCCTGTTTTTACTCTTTACGACAGCCATCCTT
TTCTAAATCATTCCGCTCAATGACGGGTTTATTTTCCTTTCTTACTAAAA
TATATGTTTTGACTGGCTGTTGTCACCCTCCCTATGACATCATCATCCCC
TCACATACCCAAATACTTGGCTATACACTCTCTCTCATACTCGGTAATTT
CACATACTTTTTTTGTGTTTATAGCACCTTCTTGTTTTTACGAGTTTTTA
TCTTTTCTTAAAATAAATTTACATTGTATTCCCTGATTCCTTTTTACCTT
TTTATTTAACGCCTCTTCTTTTTACATTATTCATTCTAATCGTCTTATCC
TCTTTGTTACATATTTTGTTAACCTTTCGCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTGAAGACCCAGAAATAAATCCACA
TAATTATGGACACTTGTATTTTCGAGGAAAAACAAAACAAAACAAAACAA
ACAAACAAAAAACCAAAAAAAAAAAAAAACCAAAAAACTTAAACCAAAGA
AAGCCTCACAGAAGTGGAAGCTAAGTTCTTATTTCTGAAGACCATGTGAG
TTAAAGATACTTCCCAGAGGTTCCTGGCCTAGAATAGATTTGCCTGTCAG
CGTACTACCCGAGGATTTTCTTTCATAGTACCAGATTGTTTAATGGAAGC
CTCCAAAGGAGGGATACCACTAAAAGTCCCACAGATGACACCTATGAACT
ACAACAATGGTGATCCTGGCACAACTCAATAGTTCAGTAGTGGCATGCAT
ATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTTTTTCCTCCTT
TTCTCCTTTCTCTTTCTCCCCTTTCCCTTCATCTTTTATCAACTGTGCCC
NCTCTCAACTTTTTTTTTTTTTTTTTTTTTAATCCACCCATTACCTATAT
TATTTCTCCCCTCCCACGTTTTTTTACGCGTTTTCCACTACCCCATTCTC
CCTTACCACCCCATTCTATTTTATTTCTACTACCTTTATACCTCCCCCCC
TTTCCCCATCATTTTTCCTCCTTGCCCCTATCCGCTCACAACCATTTATT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_e05.b1 MSMg01no511_e05.b1 CHROMAT_FILE:
MSMg01no511_e05.b1 PHD_FILE: MSMg01no511_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:05 2005
         (231 letters)



>mm_chr1_28635477_28636109
          Length = 633

 Score =  344 bits (178), Expect = 2e-99
 Identities = 223/254 (87%), Gaps = 29/254 (11%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcccaaataatcaataaaaatagtatatacat-aaaataagaaactttaatccagtt 64
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 350 aattcccaaataatcaataaaaatagcatatacataaaaataagaaactttaatccagtt 291

                                                                       
Query: 65  attttaacttaacattctaatataattgtaataaccttctgc-aaaaacactgactatgt 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 290 attttaacttaacattctaatataattgtaataaccttctgcaaaaaacactgactatgt 231

                                                                       
Query: 124 tttatcactttgtccattatttaaa----------ctctctctctctctctctctctctc 173
           |||||||||||||||||||||||||          |||||||||||||||||||||||||
Sbjct: 230 tttatcactttgtccattatttaaactctctctctctctctctctctctctctctctctc 171

                                                                       
Query: 174 tgtgtgtgtgtg---------------g--gggggtgtataatattttgaagtttatcac 216
           ||||||||||||               |  ||||||||||||||||||||| ||||||||
Sbjct: 170 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtagggggtgtataatattttgaattttatcac 111

                         
Query: 217 caaaggaaatctaa 230
           ||||||||||||||
Sbjct: 110 caaaggaaatctaa 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 633
Length adjustment: 9
Effective length of query: 222
Effective length of database: 624
Effective search space:   138528
Effective search space used:   138528
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)