Query= MSMg01no511_h23.b1 MSMg01no511_h23.b1 CHROMAT_FILE:
MSMg01no511_h23.b1 PHD_FILE: MSMg01no511_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:23 2005
(596 letters)
>mm_chr1_89791909_89792905
Length = 997
Score = 1067 bits (552), Expect = 0.0
Identities = 584/598 (97%), Gaps = 8/598 (1%)
Strand = Plus / Plus
Query: 6 gaattcaagttttacccatgatcatcatttattcagacttaacttatttatgtctacact 65
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaagttttagaaatgatcatcatttattcagacttaacttatttatgtctacact 265
Query: 66 ggattgtctatatcttcttcctcttcacttcagctttgtctgttggaaggagaaatatga 125
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggattgtctgtatcctcttcctcttcacttcagctttgtctgttggaaggagaaatatga 325
Query: 126 actttatgagaggtgttcttggatgtattatttctttccaggtcatgctcagaacaaagt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 actttatgagaggtgttcttggatgtattatttctttccaggtcatgctcagaacaaagt 385
Query: 186 taggttaacaggctcattcttttcctagttctatccagtgtcatttctgggaagctgctg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taggttaacaggctcattcttttcctagttctatccagtgtcatttctgggaagctgctg 445
Query: 246 tgttttcagagatgtgggacagtgttgtggccatgcgtaacaaatggagatggctcctca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgttttcagagatgtgggacagtgttgtggccatgcgtaacaaatggagatggctcctca 505
Query: 306 gtcactctggcttcct-caagccagacccactgtggctactcatgacctgatagacaggg 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtcactctggcttcctgcaagccagacccactgtggctactcatgacctgatagacaggg 565
Query: 365 tctctgaggcagggtttgtccatggggaaagacgttttgaattttcttttcaggtctttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tctctgaggcagggtttgtccatggggaaagacgttttgaattttcttttcaggtctttt 625
Query: 425 aaaatcttaaatcttgtagttagaatgtcattgtcgtcgtagtcgttgtcatctcctcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaaatcttaaatcttgtagttagaatgtcattgtcgtcgtagtcgttgtcatctcctcct 685
Query: 485 cctcctcttcttcttcctcctcctccccctcccccttcttcttccaactcctcttcctac 544
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cctcctcttcttcctcctcctcctccccctcccccttcttcttccaactcctcttcctac 745
Query: 545 tcctcttcttcatcttactcttcctcct------tcttttttcttttttttttttttt 596
|||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 746 tcctcttcttcatcttactcttcctcctcctccttctttttt-ttttttttttttttt 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 997
Length adjustment: 10
Effective length of query: 586
Effective length of database: 987
Effective search space: 578382
Effective search space used: 578382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_h23.g1 MSMg01no511_h23.g1 CHROMAT_FILE:
MSMg01no511_h23.g1 PHD_FILE: MSMg01no511_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:23 2005
(501 letters)
>mm_chr1_89932960_89933857
Length = 898
Score = 791 bits (409), Expect = 0.0
Identities = 478/503 (95%), Gaps = 7/503 (1%)
Strand = Plus / Minus
Query: 1 tctggggaagattcatgggtgttgtgttataaaactatcatcaaataccctaggtaggac 60
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 592 tctgggggagattcatgggtgttgtgttataaaaccatcatcaaataccctaggtaggac 533
Query: 61 ctagcacactgaacaacaacacatgcctagacacatagtcacacattttccttgtaaata 120
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctagcacaccgaacaccaacacatgcctagacacatagtcacacattttccttgtaaata 473
Query: 121 tgtatgtataaatccatccatacttttttacccc-acaatacaaacactatgtgtgaaac 179
|||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||||
Sbjct: 472 catatgtataaacccatccatacatttttacccctacaatacaaacactgtgtgtgaaac 413
Query: 180 atggctgccatatcaaatagtaaggtaaataaatgtccccagagttgtttttgcttgttt 239
|| |||||||||| |||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 412 atagctgccatatgaaatagtaag----ataaatgttaccagagttgtttttgcttgttt 357
Query: 240 gttctttggtttagatacataaatgtactgcatgcaagctctttatcaagacccttcaca 299
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 356 gttctttggtttagatacatagatgtactgtatgcaagctctttatcaagacccttcaca 297
Query: 300 tatacacatatatgtgaatgtgtgtggctgagcattgtgtgtgtgaattagtgtctgaga 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 296 tatacacatatatgtgaatgtgtgtggctgagcattgtgtgtgtgtattagtgtctgaga 237
Query: 360 ctgagcgctggactggtagccatggcgatggtggtggtttgtgtgagtgtgtgtaactaa 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctgagggctggactggtagccatggcgatggtggtggtttgtgtgagtgtgtgtaactaa 177
Query: 420 gtgtgtggatgtgcg-gggtgtgcatgtgtgtggtacatgcccagagtgattacctacca 478
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gtgtgtggatgtg-gagggtgtgcatgtgtgtggtacatgcccagagtgattacctacca 118
Query: 479 atcctaccgcttacctcataaga 501
||||||| |||||||||||||||
Sbjct: 117 atcctactgcttacctcataaga 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 898
Length adjustment: 10
Effective length of query: 491
Effective length of database: 888
Effective search space: 436008
Effective search space used: 436008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
