BAC Information

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BAC

Clone NameMSMg01-511I12
Chromosome1 (Build37)
Map Location 147,286,818 - 147,287,152
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs21, Rgs18, LOC667877, LOC625057, LOC383570
Downstream geneLOC383571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511I12.T7 (MSMg01no511_i12.b1)MSMg01-511I12.TJ (MSMg01no511_i12.g1)
ACCAG584705AG584706
length744734
length of high quality
(start - end)
48 (69 - 116)377 (78 - 454)
definitionCHROMAT_FILE: MSMg01no511_i12.b1 PHD_FILE: MSMg01no511_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:25 2005CHROMAT_FILE: MSMg01no511_i12.g1 PHD_FILE: MSMg01no511_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTTGCATACCGAATGGCAGAGAAGCACCTGAAAAAAATG
TTCAACATCCTTATTCATTTGAGAAATGCACATCAAAACAACCCTGATAT
TCCACCTCACACCAGTCTTAATGGCTAGGATCAAAAATTCATGTGACACT
AGATGCTGGCGAGGATGTGGAGATAGAGGAACACTGCTCCATTGTTGGCG
GGATTGCAAGCTTGTATAAACCACCCTGGAAATCATTCTGGAGGTTCCCC
ATAAAATTGTATATAGTACTACTGGAGGATCTTTTAATACCCCTCCTGTG
CATATATCCAAAAGATGTCCTAACTGGTAATAAGGACGCATGCCCCTCTA
TGTTCATAGCATTCTTACTTATAATAGCCTGAATTTGGAAAGTACCCATA
TGCCCCTCATCACACGCAATTGATACACACATTGTGGTACCTTTACACCC
AGGAGTCTACTTTGTCTATCACCAAGATTGAATTCATGAAACCTCTAACT
ATATGTTTTGTTACTCGTTGTGCATCACCTTTGATTGACGTTTATTCTTT
TTCCCCATCCCATTTTTTTTCCTATGTTTTTTCTCCCGCATTACCCCCAT
TCTTTATTCCCCTTTTTTTTTCCCCACCCCTTTTGACACCTTAATACTAC
CAATTTCGCTTATAAATTCTACGGGATATCCAAATCTTCTTACG
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCTTTAAAACCTGGGTGGAA
GAGGCAAAGGAAAGGAGATCTTTGAGTCTGAGGCCAGTCTGGTTTATGTA
TTAGATTACAGACTAGCCTGGGTTACTGAATGAAACTCTGTCTGGAAACA
AAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGACAGACAGAGAGAGACAGAGACAGAGAC
AGAGACAGAGAGAGAGGGAGAGAGAGAGAGACAGAGAGAGAGAGAGACAG
AGAGAGAGAGAGAGAGAGACAGAGAGAAGAAAATAGTAAGAAACCATATC
CCAGCACACAAATCCAACAGAAGTCTCCTGATCTAATAGAGGCCATGCTG
GTATCCTAAACCTTAGTTATGACCCTGCCCATAGACATGCAATATTTCCG
TATAGTCTGCCGAGCCTTCCAAACCGCATTCCTCCCATTGTCCCGGTATC
CTGGTCCACAACTCCCACTGTTCTACTAGAGGTCATGCCGATGTCTAGAA
CCCCACGAAAGATACACCCAGATTTTGTCCACACTCTTTAAAGTCCGCTT
CAGTTTCCTAACAGCACTCCCGCTCTTATTTCCTTATGCTGACCCCTTAA
TACCAGAGAAGACCCCGGTGAACCTATCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_i12.g1 MSMg01no511_i12.g1 CHROMAT_FILE:
MSMg01no511_i12.g1 PHD_FILE: MSMg01no511_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:25 2005
         (377 letters)



>mm_chr1_147286618_147287394
          Length = 777

 Score =  513 bits (265), Expect = e-149
 Identities = 332/377 (88%), Gaps = 42/377 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttctttaaaacctgggtggaagaggcaaaggaaaggagatctttgagtctgaggccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttctttaaaacctgggtggaagaggcaaaggaaaggagatctttgagtctgaggccag 260

                                                                       
Query: 61  tctggtttatgtattagattacagactagcctgggttactgaatgaaactctgtctggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctggtttatgtattagattacagactagcctgggttactgaatgaaactctgtctggaa 320

                                                                       
Query: 121 acaaaaaggagagagagagagagagagagagagagagagagagagagagagagagagaga 180
           |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |   
Sbjct: 321 acaaaaaggagagagagagagagagagacagagagagacagagacagagagagag-g--- 376

                                                                       
Query: 181 gagagagagagagagacagacagagagagacagagacagagacagagacagagagagagg 240
             ||||||||||||||||||  ||||||||                ||||||||||||| 
Sbjct: 377 --gagagagagagagacaga--gagagaga----------------gacagagagagag- 415

                                                                       
Query: 241 gagagagagagagacagagagagagagagacagagagagagagagagagagacagagaga 300
            |||||||||||||  ||||||||||||||  ||||||||||||||||            
Sbjct: 416 -agagagagagaga--gagagagagagaga--gagagagagagagaga------------ 458

                                                                       
Query: 301 agaaaatagtaagaaaccatatcccagcacacaaatccaacagaagtctcctgatctaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agaaaatagtaagaaaccatatcccagcacacaaatccaacagaagtctcctgatctaat 518

                            
Query: 361 agaggccatgctggtat 377
           |||||||||||||||||
Sbjct: 519 agaggccatgctggtat 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 212
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)