BAC Information

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BAC

Clone NameMSMg01-511K01
Chromosome1 (Build37)
Map Location 31,933,839 - 31,934,179
singlet/doubletsinglet
Overlap genenone
Upstream genePtp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneLOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511K01.T7 (MSMg01no511_k01.b1)MSMg01-511K01.TJ (MSMg01no511_k01.g1)
ACCAG584778AG584779
length714712
length of high quality
(start - end)
341 (69 - 409)312 (74 - 385)
definitionCHROMAT_FILE: MSMg01no511_k01.b1 PHD_FILE: MSMg01no511_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:33 2005CHROMAT_FILE: MSMg01no511_k01.g1 PHD_FILE: MSMg01no511_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACCTTAACXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCACCTAGATTTCCAGTACTTTAAACTCATACTGTCAATCATTGAA
ATCAGTGTCTTTCCTTTTCTTTTATACAACACCAATGCTACTTTAATGGT
TCAAATTCTGAACTCCACCAAAATTTATGTCAGGTACAATACAGCATCAC
TCAAAACATAAACACCTCAGCTTCATGAATGCAATAGTAAGCCCTTTAAA
ATATTCATCTGGTAATATAAATTTGGAGAGAAAGGAGAAAATATTTTGGG
AAAATATTCCTTACATGTGCTGTTTGAAGTCAATGACAGAACAATTTTTA
ATGGACACAGAACAATATGTAAAGATAAAGCCAACTCTGGCGTTACATAC
ACTGAACTCTAGCACCTCACTGGTAGAAGAAAATGAATTTTCAAAGATCT
TACAGAGAAATCACAGCAAATAATGTGACTCCTGGGGTATGAAGTCTAGC
GAATAGAACATTTCAAAAAAAGAATGAATGTGTAGTTATTACCTAGACAT
TCTGTAAGAACACGATAAAGACCGTGTTAAATTTACATTGACAGCCATGA
TCACTGACCTTTAACAGTTTTTCTCTTATAACGACTAGCATAAAAACTTG
CTACACATTCCCTCACTTTTCGGTCTCTGTTTGAAAATCCAAACCCCTCA
TTCTTGCTTATGCA
TCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAGCTCTGTACTCCATTTTCT
AATGGGGTAATTTGAATTTCTGGAGTCCAGCTTCTTCAGCTCTTTGTATT
TATTGGATATTAGTCCCCTATCATATTTAGGATTGATAAAAATCCTTTCC
CAATCTGTTGGCGGCCTTTTTGTCTTATTGACAAATGTCTTTTGCCTTAC
AGAAGCTTTGCAATTTTATGATGTCCCCTTTGTCAATTCTTGATCTTACA
GCACAAGCCATTGCTGTTCTATTTTGGAATTTTTCCCAGGTGTCCATATA
TTCTAGGCTTTTTCCCACTTTCTCCTCTATTAATTTCAGCGTCCCTGGTT
TTATGTGAAGGTCTTTGATCCTCTTATACCCGATCTTTGTACAATGAGAT
AATAATGGATCAACTCACATTCCTCTATATGATAACCATGCCCGTTTCAT
TTTGATTTAAATGCTGTCTTTTTTCCACTGGATGGCGTTATTTTCCTTGT
CAAAGATCAAGTGATCATAGGCGCGTGGATTCATTTTTGGGCCTTCCATT
CTATTCCATTGATCTATCTGTTTGTCCCTTTACCAGTACTATGCATTTTT
TATCACAATTGCACTGCATTACACGTATTGTGATGCTCCCCAAACTTCTT
TTATTGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_k01.b1 MSMg01no511_k01.b1 CHROMAT_FILE:
MSMg01no511_k01.b1 PHD_FILE: MSMg01no511_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:33 2005
         (341 letters)



>mm_chr1_31933639_31934379
          Length = 741

 Score =  590 bits (305), Expect = e-173
 Identities = 332/341 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtactttaaactcatactgtcaatcattgaaatcagtgtctttccttttcttttataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agtactttaaactcatactgtcaatcattgaaatcagtgtctttccttttcttttataca 482

                                                                       
Query: 61  acaccaatgctactttaatggttcaaattctgaactccaccaaaatttatgtcaggtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acaccaatgctactttaatggttcaaattctgaactccaccaaaatttatgtcaggtaca 422

                                                                       
Query: 121 atacagcatcactcaaaacataaacacctcagcttcatgaatgcaatagtaagcccttta 180
            ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 421 ctacagcatcactcaaaacagaaacacctcagcttcatgaatgcaataggaagcccttta 362

                                                                       
Query: 181 aaatattcatctggtaatataaatttggagagaaaggagaaaatattttgggaaaatatt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 361 aaatattcatctggtaatataaatttggggagaaaggagaaaatattttgggaaaatatt 302

                                                                       
Query: 241 ccttacatgtgctgtttgaagtcaatgacagaacaatttttaatggacacagaacaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 301 ccttacatgtgctgtttgaagtcaatgacagaacaatttttaatggacacagaacaatac 242

                                                    
Query: 301 gtaaagataaagccaactctggcgttacatacactgaactc 341
            ||||||||||||||||||||| ||||||||  ||||||||
Sbjct: 241 ataaagataaagccaactctggtgttacatatgctgaactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)