Query= MSMg01no511_l22.b1 MSMg01no511_l22.b1 CHROMAT_FILE:
MSMg01no511_l22.b1 PHD_FILE: MSMg01no511_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:41 2005
(524 letters)
>mm_chr1_138676760_138677683
Length = 924
Score = 942 bits (487), Expect = 0.0
Identities = 508/515 (98%)
Strand = Plus / Minus
Query: 7 gaattcaattccttttactgtaaaagcaaaatggtatttaatagataatttactttggag 66
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 721 gaattcaattcctaccactgtaaaaacaaaatggtatttaatagataatttactttggag 662
Query: 67 gagaaatctatatgccctattgaacaaattctaccaaaaggtctaagtacgatgtgtggc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gagaaatctatatgccctattgaacaaattctaccaaaaggtctaagtacgatgtgtggc 602
Query: 127 ttagttaacataagagcaagcttctggcatgtgcctcacttcatcttttaatgcagaatt 186
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 601 ttagttaacataagagcaagcttctggcatgtgcctcacttcatcttttactgcagaatt 542
Query: 187 aaacaaagaaacccgattcaatagttcaaaagacgacacaaagaaaatcattggaaatat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaacaaagaaacccgattcaatagttcaaaagacgacacaaagaaaatcattggaaatat 482
Query: 247 attctttattatacccgaggaaaaaagtcagcatgtgtctcatcacataactgaaggaac 306
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 481 attctttattatacccgaggaataaagtcagcatgtgtctcatcacataactgaaggaac 422
Query: 307 aattatcaagataatcacgaaagtactcagaacagtggttggctctttacagaaatagag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aattatcaagataatcacgaaagtactcagaacagtggttggctctttacagaaatagag 362
Query: 367 taagtgttcactgagtgaataaaagacctcttaaaggattccagagaactgcacaagagt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taagtgttcactgagtgaataaaagacctcttaaaggattccagagaactgcacaagagt 302
Query: 427 aattctggattttaacaaacatcaaatacaattgtcccaaaaagttcactgtatgtttct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 aattctggattttaacaaacatcaaatacaattgtcccaaaaagttcactgtacgtttct 242
Query: 487 aaccaaagaaacaatagttaagtttgggggggttg 521
|||||||||||||||||||||||||||||||||||
Sbjct: 241 aaccaaagaaacaatagttaagtttgggggggttg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_l22.g1 MSMg01no511_l22.g1 CHROMAT_FILE:
MSMg01no511_l22.g1 PHD_FILE: MSMg01no511_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:41 2005
(443 letters)
>mm_chr1_138498298_138499140
Length = 843
Score = 808 bits (418), Expect = 0.0
Identities = 441/456 (96%), Gaps = 13/456 (2%)
Strand = Plus / Plus
Query: 1 ttttaacaagttttcattctttgtttctcctccaacgactcctcctcctcctccatctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttttaacaagttttcattctttgtttctcctccaacgactcctcctcctcctccatctcc 247
Query: 61 atttctattgatggatttttgttgttgttgctgttttggtttggtttgg-----tgtttt 115
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 248 atttctattgatggattttttttgttgttgctgttttggtttggtttggtgttttgtttt 307
Query: 116 ttttgttttttg--------ttttttttgagacatgatctcacaatgtaaccctggatgt 167
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttttttttttgttttttttttttttttgagacatgatctcacaatgtaaccctggatgt 367
Query: 168 cctggaacttgctctacagactaggctggcctcaaactcacagagatctgtctgcttctg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctggaacttgctctacagactaggctggcctcaaactcacagagatctgtctgcttctg 427
Query: 228 cctccctagtgctgacacaaaaggcgcgggccaccactacctggcatgtttttaaagttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctccctagtgctgacacaaaaggcgcgggccaccactacctggcatgtttttaaagttg 487
Query: 288 acagtgtccagttcttttgttgtcatctgtttgcctattgggcgtctaagaattcaggtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acagtgtccagttcttttgttgtcatctgtttgcctattgggcgtctaagaattcaggtc 547
Query: 348 aaatcctaatcatgccaagtcctaaagctctcttcctgtgttttcttctaagctttgtag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaatcctaatcatgccaagtcctaaagctctcttcctgtgttttcttctaagctttgtag 607
Query: 408 cacttttcttacacttaccactgacacagcatcttc 443
||||||||||||||||||||||||||||||||||||
Sbjct: 608 cacttttcttacacttaccactgacacagcatcttc 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
