TTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAATTCTCCAGGTTGGCTGGCCAGTGAGCCCCATGCTTGCTCAT
TTCTCTTTCCCAAGGGGCCAGAGTATAACCTGGTGATTGAAGTGTTTGCA
TGATATATTAGTTAGGGTTGTCTATCTAGAGTAATAGAGTTCAAAGAATA
AATCATATGTAATACACACACACACACAAATAATATGAATAAATTATTGG
AATGAATTATAGGCTGCAGTCTAGCTAATCCAGCAATGGCAGGCTGTGAA
CAGGAAGTCCAAGAGTCTAGTAGTTGCTCAGTGCACAGGCTGGATATCTC
AGCTGCTCTTCAGAATATGCCAGAATCCTGAACAGTTAGGCCCTAATGCC
AGTGAAGGAATGGATGTGCTAGCAAGGTGAGAGCAAGCAGCTAAAGAAAA
GGTTTCCTTCTTCTATGTCCTTCTATAGACTTCCAGCAGAAGGTGTGGTC
CAGATTAAAGGTGTGTTTTTCCACCTCAATATCCTGATAAAAGGCATTGT
ATCTTCCTGTCTCCAAGTACAGACAAGAAGTGAATTAACCCACTTCAGAC
AAAGAAAAAAAATCTCTCATAGGTGTGCTCTCCTTTTCTGGATTATAATT
CATTCCTGATGTAGTCAAGTTGACAGTCAATAATAGCTATCACAAATGGT
TAGTGCTTCTACTCCTTAGCCTTTGTCCTGGCCCTATTATGTGA

CGATTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATAGGCCACATGAACTCCATGT
AGCTGTTAGAACCTTTACAAGGGAAGCCAAAGCTTTGAAACAAAGCAGCC
AAAAAGATGGGAGAGGTTTTACACATAAAAGGTATAAACACAGAAGAAAG
GCACCAAGTCGGAACAGCACAAGCCATTGGCTTTACCACAGCCCTGGAGG
GCATGCACAGTTCCTACAAATGCAACCCAAAGCCAGTGGCCTGATGTGCT
CTCTTGAGGATGAAATCTCAGAAGAAACTTTGAAGTACATTTTATTGGCA
GGATCCTCTACTGTGAACGATCCCCAGAAAGAAAATTTTCTCAAGTCCGG
AGTGGCTACTGATACTGGAAAGGCCTTTCCTCTTCTGAGATCATTTTCTC
AACCTTGAGACAGGCCAGTTCTCCCGAACTTGATGTGTAGATAAGAGAGG
CCAACAAGTGAACATCTGGAAGACTGGACTGACCTCCCAGAAGCCAAGTG
GCAACTATCAGAAGGCAAGATGACCAGTCAAAGGCAGAGAACAAGGAAGT
CACACAGATTATCTGTGAGAAAACCAATTACCAAAGAGAAAGGAACGCCA
CCAAGACACTGCTGAAGAACACTGTCCCAAGTACACTTCTCTCTCGCCCC
AGTTGGGCGTCTGAGGGGCATTAACATGGCTGAGGCAAGAATGGCAAAAC
N

Query= MSMg01no511_n13.g1 MSMg01no511_n13.g1 CHROMAT_FILE:
MSMg01no511_n13.g1 PHD_FILE: MSMg01no511_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:49 2005
         (485 letters)



>mm_chr1_189107241_189108124
          Length = 884

 Score =  915 bits (473), Expect = 0.0
 Identities = 482/485 (99%), Gaps = 1/485 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actataggccacatgaactccatgtagctgttagaacctttacaagggaagccaaagctt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 actataggccacatgaactccat-tagctgttagaacctttacaagggaagccaaagctt 626

                                                                       
Query: 61  tgaaacaaagcagccaaaaagatgggagaggttttacacataaaaggtataaacacagaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 625 tgaaacaaagcagccaaaaagatgggagaggctttacacataaaaggtataaacacagaa 566

                                                                       
Query: 121 gaaaggcaccaagtcggaacagcacaagccattggctttaccacagccctggagggcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaaggcaccaagtcggaacagcacaagccattggctttaccacagccctggagggcatg 506

                                                                       
Query: 181 cacagttcctacaaatgcaacccaaagccagtggcctgatgtgctctcttgaggatgaaa 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgcagttcctacaaatgcaacccaaagccagtggcctgatgtgctctcttgaggatgaaa 446

                                                                       
Query: 241 tctcagaagaaactttgaagtacattttattggcaggatcctctactgtgaacgatcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcagaagaaactttgaagtacattttattggcaggatcctctactgtgaacgatcccc 386

                                                                       
Query: 301 agaaagaaaattttctcaagtccggagtggctactgatactggaaaggcctttcctcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaagaaaattttctcaagtccggagtggctactgatactggaaaggcctttcctcttc 326

                                                                       
Query: 361 tgagatcattttctcaaccttgagacaggccagttctcccgaacttgatgtgtagataag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagatcattttctcaaccttgagacaggccagttctcccgaacttgatgtgtagataag 266

                                                                       
Query: 421 agaggccaacaagtgaacatctggaagactggactgacctcccagaagccaagtggcaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaggccaacaagtgaacatctggaagactggactgacctcccagaagccaagtggcaac 206

                
Query: 481 tatca 485
           |||||
Sbjct: 205 tatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space:   415150
Effective search space used:   415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)