XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTATA
ACAAAATGCATTTTTTCAACTGCCCATATGTAAACACTAGTTAAAGTTAC
ACTAATAAATATCCATGAGGTAAATATAGGTTAATAAACTATGATGGTGC
TAGGCATCTATTGGTGGTTTTATTTTAATACATTTGACTTACAAACATAT
TAAAAATATTACAGTTAAGACAAGAGAAGTCCATAAAACTCCTTATGTTC
ATACTGCTACTCAGAGCTTGCCCTGCTGCTGAGGATAGCCATCACCGATT
GTCTAAAATCCATCACTCTCAGTTCCCAACAGAATCAAGACAGAACCCAC
AATTACATCTTAAGGTTTAAGGAAGGCCAGTCTGGATTGCTCTCCTAAAA
TCAGAATTCATTTTAAACTCTGCATTGCAGCATACCGCTGTTATCACCAC
ATCCCATATGCCAATACAGGAAGATCCTGAATTCAGAGCCAGTCCAGGAT
GTACAATGAGATCTTCTCTAAAAAATATTTTTGAAAAGAGCAAAAATTAA
TTACTTTTTCATTTTTATTTACTGAAAATAAGACTATAGTATCATAGACT
TAATCTTGTATTTTGTCTTTCAGAATTTAAAACTACATAATATATTATAT
ATAATTGGGATTTATTCATGTTCATAGTTAATTAACTTATACCCAAACAA
TACTAATTGGAAACTTTTTATCCTACTACTAGAAACATTAAGAAAATTCT
CAGCTATCTTTTAAAATGTATTT

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACCACAGAGGAATAGCATATGTCTGAGAAGAATCTA
AAGAAATGTTCAACATCTTTAGTCATCAGGGAAAGACCAATCAAAACTAC
CCTGAGATTGCACCTCACAGAAGTCAGAATGGATAAGATCAAAAACTCAT
GTGATACTAGAGGCTGGAGAGGTTGTGGAGAAAGAGGACTACTCCTTCAT
TACTGGTGGGATTGCAAGCTAGTACAACCAATCTGGAAATCAGTTTGGCA
GTTCCTCAGAGAATTGGAGATAATACTACCTGAGGACCCACTAATACCAC
TCCTGGACATATACCCAGAAGATGCTCCAATATGTAATAAGGACACAGTC
TCCACTATGTTCATCCCATCCTTATTTATAATAGCCAGGAGTTGGAAAGA
ACCCAGATGTCTGTCAACAGAGAAATGGATACAGAAACTGTGCTGCATTT
ACAGAATGGAGTACTACCCAGCTATTAAGAACAACAAATTCTGGCTGGTG
AAATGGCTCAGTGGGTAAGAGCACTGACTACTCTTCTGAAGGGCCTGACT
TCAAATCCCAGCAACCATTGGTGGCTCATAACCACCTGTAATGAGATCTG
ACACCCTCATCTGGTGTGTCTGAAGAAACTACAGNGTACTTCTTTTATAT
AGTATATAAATCTTTAAAAAAAAAGATATAATCATGAAATTTTCTATGCA
GTGGGAGGAACTATAAAATATAATCTGAATAGN

Query= MSMg01no512_a19.b1 MSMg01no512_a19.b1 CHROMAT_FILE:
MSMg01no512_a19.b1 PHD_FILE: MSMg01no512_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:04 2005
         (702 letters)



>mm_chr1_31447001_31448103
          Length = 1103

 Score = 1305 bits (675), Expect = 0.0
 Identities = 693/699 (99%), Gaps = 1/699 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtta-taacaaaatgcattttttcaactgcccatatgtaaacactagttaaag 63
           |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaattcagttagaaaaaaaatgcattttttcaactgcccatatgtaaacactagttaaag 844

                                                                       
Query: 64  ttacactaataaatatccatgaggtaaatataggttaataaactatgatggtgctaggca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ttacactaataaatatccatgaggtaaatataggttaataaactatgatggtgctaggca 784

                                                                       
Query: 124 tctattggtggttttattttaatacatttgacttacaaacatattaaaaatattacagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tctattggtggttttattttaatacatttgacttacaaacatattaaaaatattacagtt 724

                                                                       
Query: 184 aagacaagagaagtccataaaactccttatgttcatactgctactcagagcttgccctgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aagacaagagaagtccataaaactccttatgttcatactgctactcagagcttgccctgc 664

                                                                       
Query: 244 tgctgaggatagccatcaccgattgtctaaaatccatcactctcagttcccaacagaatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgctgaggatagccatcaccgattgtctaaaatccatcactctcagttcccaacagaatc 604

                                                                       
Query: 304 aagacagaacccacaattacatcttaaggtttaaggaaggccagtctggattgctctcct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aagacagaacccacaattacatcttaaggtttaaggaaggccagtctggattgctctcct 544

                                                                       
Query: 364 aaaatcagaattcattttaaactctgcattgcagcataccgctgttatcaccacatccca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaaatcagaattcattttaaactctgcattgcagcataccgctgttatcaccacatccca 484

                                                                       
Query: 424 tatgccaatacaggaagatcctgaattcagagccagtccaggatgtacaatgagatcttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tatgccaatacaggaagatcctgaattcagagccagtccaggatgtacaatgagatcttc 424

                                                                       
Query: 484 tctaaaaaatatttttgaaaagagcaaaaattaattactttttcatttttatttactgaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tctaaaaaatatttttgaaaagagcaaaaattaattactttttcatttttatttactgaa 364

                                                                       
Query: 544 aataagactatagtatcatagacttaatcttgtattttgtctttcagaatttaaaactac 603
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 363 aataagactatagtatcatagacttgatcttgtattttgtctttcagaatttaaaactac 304

                                                                       
Query: 604 ataatatattatatataattgggatttattcatgttcatagttaattaacttatacccaa 663
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 303 ataatatattatatataattgtgatttattcatgttcatagtcaattaacttatacccaa 244

                                                  
Query: 664 acaatactaattggaaactttttatcctactactagaaa 702
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acaatactaattggaaactttttatcctactactagaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1103
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1093
Effective search space:   756356
Effective search space used:   756356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)