Query= MSMg01no512_b11.b1 MSMg01no512_b11.b1 CHROMAT_FILE:
MSMg01no512_b11.b1 PHD_FILE: MSMg01no512_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:08 2005
(447 letters)
>mm_chr1_160068234_160069079
Length = 846
Score = 849 bits (439), Expect = 0.0
Identities = 442/443 (99%), Gaps = 1/443 (0%)
Strand = Plus / Plus
Query: 5 gaattcactaccaggacaaatcctgcttgttcataatttacatagacattgcttatcata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaccaggacaaatcctgcttgttcataatttacatagacattgcttatcata 264
Query: 65 cttcaaataggcccatggaagccttgtgtaaactcgctctgtctacctaaccaactttat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcaaataggcccatggaagccttgtgtaaactcgctctgtctacctaaccaactttat 324
Query: 125 ctggtactgccctcccattcgattccttttagccacactggccagttcttttgtcctaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggtactgccctcccattcgattccttttagccacactggccagttcttttgtcctaac 384
Query: 185 accccgggctcaatcctgatctttgaaatctttgctttattttcaccctgcacagaaatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accccgggctcaatcctgatctttgaaatctttgctttattttcaccctgcacagaaatc 444
Query: 245 ttttgctaagattcccatcttctcatctttagggagtcctccaggcccccattctgaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttgctaagattcccatcttctcatctttagggagtcctccaggcccccattctgaaaa 504
Query: 305 gcttctctgcctttgaatacaccaacttggtctctggaacttaccctngtctctttacac 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 gcttctctgcctttgaatacaccaacttggtctctggaacttaccct-gtctctttacac 563
Query: 365 taccctccttcctctcctcacagtactcatcggcacatagtcttgttgattatctgtctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taccctccttcctctcctcacagtactcatcggcacatagtcttgttgattatctgtctc 623
Query: 425 ctcatcacgaatacatgaactta 447
|||||||||||||||||||||||
Sbjct: 624 ctcatcacgaatacatgaactta 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 846
Length adjustment: 10
Effective length of query: 437
Effective length of database: 836
Effective search space: 365332
Effective search space used: 365332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_b11.g1 MSMg01no512_b11.g1 CHROMAT_FILE:
MSMg01no512_b11.g1 PHD_FILE: MSMg01no512_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:08 2005
(582 letters)
>mm_chr1_160086300_160087281
Length = 982
Score = 704 bits (364), Expect = 0.0
Identities = 414/434 (95%), Gaps = 7/434 (1%)
Strand = Plus / Minus
Query: 1 aatcatcctgcttgtccttgaatactctagtagagaattaaacctctctactcccaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aatcatcctgcttgtccttgaatactctagtagagaattaaacctctctactcccaacca 368
Query: 61 tactattattattactattacacactgtagatctgaggagattgggaggtagcgaaagct 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 367 tactattattattactattacacactgtagatctgaggagattgagaggtagcgaaagct 308
Query: 121 gggagatctgtcaactcacaaagtgaaggtaccgtagacaacaacttctgccaggctctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gggagatctgtcaactcacaaagtgaaggtaccgtagacaacaacttctgccaggctctc 248
Query: 181 aggagagtggcaacttggtggcttggaaaaaaataacctagaaggaatctctctctctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aggagagtggcaacttggtggcttggaaaaaaataacctagaaggaatctctctctctct 188
Query: 241 ctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtngtgtgtgtgtgtctctc 300
|||||||||||||||||| | | | | | | | | ||| |||||||| | ||||||
Sbjct: 187 ctctctctctctctctctctctctctctctctctctgt-----gtgtgtgtctctctctc 133
Query: 301 tctctctctctctctgtctctctctctctctctctctctctgtgtgtgtctctctcccta 360
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 132 tctctctctctctctgtctctctctctctctctctctctc--tgtgtgtctctctcccta 75
Query: 361 tctatctatctatctatctatctatctatctatctacctacctacctctcattctttctc 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 74 tctatctatctatctatctatctatctatctatctatctacctacctctcattctttctc 15
Query: 421 tctctcacctctct 434
||||||||||||||
Sbjct: 14 tctctcacctctct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 163
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
