BAC Information

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BAC

Clone NameMSMg01-512C23
Chromosome1 (Build37)
Map Location 26,520,665 - 26,521,220
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik, LOC677427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512C23.T7 (MSMg01no512_c23.b1)MSMg01-512C23.TJ (MSMg01no512_c23.g1)
ACCAG585204AG585205
length1,252770
length of high quality
(start - end)		---556 (66 - 621)
definitionCHROMAT_FILE: MSMg01no512_c23.b1 PHD_FILE: MSMg01no512_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:15 2005CHROMAT_FILE: MSMg01no512_c23.g1 PHD_FILE: MSMg01no512_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAAAAAAATAGAGGGGCGGGGCGCGGGCCNNNNATANAANAAACCTATA
AAGAAAACAACAATAATTTTATATTCACATTTCACCATCTCGGCGCGGGT
GTGGGGTTGTCCGACGAAAAGAGAAAAAAGAACCGCCGCCTCGTGGTGTG
CGTTGGGTCGCCCCGCGGACAGAGAAAGGAAGAAAGCCCCGCAAANATAT
CATGTGGGGAAGAAGGAAGAAAGAGGGTAGGGTGTTTTCTCTCTATTCTC
GACGCCGCCCGCGTTGCCGGGGGGGGGGGCGAGGGGGGGAGGGGAGGTGG
AATAGAGGCGGTCGAAAGGAGGGGGATGGGAGGGGGGTTTCAATTGAAGA
CCAGGAGGGCGCGGGGGGGGTGGCGTGGTTTGTTTACGTAAGAAAAGTTA
ACAGGTATGTGGCGCGGTGGCGTGCGGGTTTCCTTTTAAGCAGAACGAAC
GGGGCGGGGGAGGCGGGGGGGGAGGGAGGGAAAATGAAGAAAGTCCGGGG
CGGGGCGGGGGGGGGGGGGAGGGGGAGTAGGATCGGCGGGTGGGCACGCA
CGTTTTGGGGGGTGTTGTTGCGAGGGGAGGGAGGGGAGGTGGGGGGTGAG
GGGGAGGGAGGGGTGAGGAGGGGGGCGGTGGGGGCGGGCGGGGATAAATG
AGGAGGAGGGCGGANCGCGCGGCCGAGGGCGCGACGGGANAGTGTGTGAT
GCCGAATGGGCGGCGGGCGGGTGCGGCTATGTTGGCGGGAGGAGGAGGAA
ATAGGGTGGTGTGTATTCGCGGGACGACGACGGTGAATGGTACTGCGCGG
CCGGGCGCGAGGTGTGAGGAAATAGGTTGTGTTGGTGTGGGTGGAAAGAT
AAGTACGGACGCAGAGGACAGCGTGATCGCGCTAGTGCGCGTCGACGCGC
GGCCGAAGGACGAGAATAGTATGTGCGGTGACGTGGAGAGTCGAGGAGCC
ACGCGTGATGTTGTCGTTGGGGGTGGAGATGGAAGGGACAAGAGCAGAGT
GCTGGCTCTACTACAATTCTCCGCGGGGAGCGGTGGTGTGGGCGCGGGCG
GGTGAGCACCGGCGGGGCNGTAGAGCGACACGGACACGAAGCTACCACTA
CTTTCTTTGGCGGTGGGGGGGGGGGGTGCGCGCCGCGGGGGGTATACAAA
CAAACATAAAACATATATATTTATTCTCTCGCGGTCTGTCCATTCGGCGG
ACGAGCTGGGGTAGTCACATAAATATAGAGGGAGGAGGCGAGCGAGTGGT
GG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTAATTTTTTTTCCTCTTGGTTATATCCTAGAACT
TTTGCAGCTGTGATCTTGGTTATTGTTTTTATTGATATCTAATAGTATAT
TTTCTTTGATCCTACCATGCATCATTGATATCTTTCTTCCGAAGTGCCTG
GTTTATTTCCAAGACTTTCACCTCTATCTATTGTTTGATTCATTGAGTTT
TTCATTATCAATATTTCTGTTTATTTCAGCCTGTCCAAATATGCTGAGAC
CATTTTGGTTACAGTTCAGTTGTTCAGCATTACTCTAATCACTCTAGAGT
TACCTTGCTTTGTACTTCAGAAGCCACTTTGGACCACCTATAGTTTTAGA
GACTATATACCAGGTAAAGTCTGAATATTTTCCATTCTGCACACTTTGAG
GTGGCAAACATCTGAAACAAAGCATGTGTACTGAGTTAAGATGCGGGAGA
AGAAGCAGGAACAATGAGATCTGTTATTACAGGGCTCAATTCTGTGATTT
GTGAGCTACTGGCTACAGATATTTTCACAGCTGGAATCTCCGGCTGTCTG
AGCTCCTCAACTTCTCTCCATTCAGTGCTCCCTTGATCCATGCACCCTCC
TACACAGCCATTTCCCACCCATTGGCCTGTGTAAGATGACTCACACTTTC
TGAATTGAANTTGTTCCTCTGTGCACACCTATTACAGCTGAATCTTTAAA
CATAGTTTTCTCAGAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_c23.g1 MSMg01no512_c23.g1 CHROMAT_FILE:
MSMg01no512_c23.g1 PHD_FILE: MSMg01no512_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:15 2005
         (556 letters)



>mm_chr1_26520465_26521420
          Length = 956

 Score = 1067 bits (552), Expect = 0.0
 Identities = 555/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaattttttttcctcttggttatatcctagaacttttgcagctgtgatcttggttattg 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 756 ttaattttttttcctcttggttatatcctagaacttttgcagttgtgatcttggttattg 697

                                                                       
Query: 61  tttttattgatatctaatagtatattttctttgatcctaccatgcatcattgatatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tttttattgatatctaatagtatattttctttgatcctaccatgcatcattgatatcttt 637

                                                                       
Query: 121 cttccgaagtgcctggtttatttccaagactttcacctctatctattgtttgattcattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cttccgaagtgcctggtttatttccaagactttcacctctatctattgtttgattcattg 577

                                                                       
Query: 181 agtttttcattatcaatatttctgtttatttcagcctgtccaaatatgctgagaccattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agtttttcattatcaatatttctgtttatttcagcctgtccaaatatgctgagaccattt 517

                                                                       
Query: 241 tggttacagttcagttgttcagcattactctaatcactctagagttaccttgctttgtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tggttacagttcagttgttcagcattactctaatcactctagagttaccttgctttgtac 457

                                                                       
Query: 301 ttcagaagccactttggaccacctatagttttagagactatataccaggtaaagtctgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttcagaagccactttggaccacctatagttttagagactatataccaggtaaagtctgaa 397

                                                                       
Query: 361 tattttccattctgcacactttgaggtggcaaacatctgaaacaaagcatgtgtactgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tattttccattctgcacactttgaggtggcaaacatctgaaacaaagcatgtgtactgag 337

                                                                       
Query: 421 ttaagatgcgggagaagaagcaggaacaatgagatctgttattacagggctcaattctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttaagatgcgggagaagaagcaggaacaatgagatctgttattacagggctcaattctgt 277

                                                                       
Query: 481 gatttgtgagctactggctacagatattttcacagctggaatctccggctgtctgagctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gatttgtgagctactggctacagatattttcacagctggaatctccggctgtctgagctc 217

                           
Query: 541 ctcaacttctctccat 556
           ||||||||||||||||
Sbjct: 216 ctcaacttctctccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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