Query= MSMg01no512_d24.b1 MSMg01no512_d24.b1 CHROMAT_FILE:
MSMg01no512_d24.b1 PHD_FILE: MSMg01no512_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:20 2005
(600 letters)
>mm_chr1_12675160_12676158
Length = 999
Score = 1098 bits (568), Expect = 0.0
Identities = 589/596 (98%), Gaps = 1/596 (0%)
Strand = Plus / Plus
Query: 5 gaattcacactgtgctccttcagtaatgtaatactaccacagtaaaaacattattgtaag 64
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcacactg-gctccttcagtaatgtaatactatcacagtaaaaacattattgtaag 263
Query: 65 aaaatgtttgcagttctgaattttgtccctaaaaataactgtatattgtttttagagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaatgtttgcagttctgaattttgtccctaaaaataactgtatattgtttttagagaaa 323
Query: 125 agtgtgtgagttaatagattaaatcttgaagtttattagtgttctacccaggactcagag 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 agtgtgtgagttaatagattaaatcttgaagtttattagtgttctacccatgactcagag 383
Query: 185 attactcttacatcttcctggggtatgcttttgcctactatcccttcccctccaaaaagt 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 384 attactcttacatcttcctggggtatgcttttgcctactctcccttcccctccaagaagt 443
Query: 245 tcctactgtgcattctagacatcgagtaaagcccatggctgtatccaggtttctacctgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctactgtgcattctagacatcgagtaaagcccatggctgtatccaggtttctacctgc 503
Query: 305 ccctcgcgcactgtggcaatgggatctagcaactcacatgggttaggcaagtgctctaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccctcgcgcactgtggcaatgggatctagcaactcacatgggttaggcaagtgctctaag 563
Query: 365 actaggtcatacccacgggccaagttttctgctttcatccacattactaacgatgactaa 424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actaggtcaaacccacgggccaagttttctgctttcatccacattactaacgatgactaa 623
Query: 425 gaaataaacatattacaaagcaaagatgacaacttgaccttccagatttaggataatttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 624 gaaataaacatattacaaagcaaagatgacaacttgaccttccagatttagaataatttc 683
Query: 485 catactgcttccccagaaccatacctgcagatcaatataaccaaatctcaggatcctagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catactgcttccccagaaccatacctgcagatcaatataaccaaatctcaggatcctagt 743
Query: 545 tcttaaatctcattattatctcttacacatttaatactttgctttaatgggaacta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcttaaatctcattattatctcttacacatttaatactttgctttaatgggaacta 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 999
Length adjustment: 10
Effective length of query: 590
Effective length of database: 989
Effective search space: 583510
Effective search space used: 583510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_d24.g1 MSMg01no512_d24.g1 CHROMAT_FILE:
MSMg01no512_d24.g1 PHD_FILE: MSMg01no512_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:20 2005
(510 letters)
>mm_chr1_12719484_12720395
Length = 912
Score = 963 bits (498), Expect = 0.0
Identities = 508/512 (99%), Gaps = 2/512 (0%)
Strand = Plus / Minus
Query: 1 cagaaacgcgtccatttcataatatgggacaacctaagatgctatggggta--gtgggct 58
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 712 cagaaacgcgtccatttcataatatgggacaacctaagatgctatggggtagtgtgggct 653
Query: 59 tcagtagcccctcaggaaagcagcgcttgatggtgaggttttcatctcctctgtcgctga 118
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 652 tcagtagcccctcaggaaagcaacgcttgatggtgaggttttcatctcctctgtcgctga 593
Query: 119 ttttcagtggcatcatacctgacagcagccttggtctcagagaaacgcagacacattggc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttttcagtggcatcatacctgacagcagccttggtctcagagaaacgcagacacattggc 533
Query: 179 ctcaaggttcacaaagagatggaggagagaagtttctcctacacgtgtgccttaggagaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctcaaggttcacaaagagatggaggagagaagtttctcctacacgtgtgccttaggagaa 473
Query: 239 agcatgggtttttctgcttgggaatgacttcctcccgtatgcagcggcatctgcttttct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agcatgggtttttctgcttgggaatgacttcctcccgtatgcagcggcatctgcttttct 413
Query: 299 tgagactgagtgttgccaggtaacctccctggcctggcactctggatacaatgtttcctc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgagactgagtgttgccaggtaacctccctggcctggcactctggatacaatgtttcctc 353
Query: 359 atcttctagatcctgggattgttggcctgtgcgacctttcccagctgcagccagctttga 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 352 atcttctagatcctgggattgttggcctgtgcgacctttcccagctgctgccagctttga 293
Query: 419 cataaggagggctcttttctaacaacttcactttctgtttactccacttgcagatgacag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cataaggagggctcttttctaacaacttcactttctgtttactccacttgcagatgacag 233
Query: 479 gtggagtagcctgttacagtgatgtcccagac 510
||||||||||||||||||||||||||||||||
Sbjct: 232 gtggagtagcctgttacagtgatgtcccagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 912
Length adjustment: 10
Effective length of query: 500
Effective length of database: 902
Effective search space: 451000
Effective search space used: 451000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
