Query= MSMg01no512_e15.b1 MSMg01no512_e15.b1 CHROMAT_FILE:
MSMg01no512_e15.b1 PHD_FILE: MSMg01no512_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:23 2005
(723 letters)
>mm_chr1_69858200_69859322
Length = 1123
Score = 1328 bits (687), Expect = 0.0
Identities = 711/719 (98%)
Strand = Plus / Minus
Query: 5 gaattcttagttcttcacactcgtcatgggaaggggatggcaatttcaggatagacaacc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattcttagttcttcaaactcgtcatgggaaggggatggcaatttcaggatagacaacc 720
Query: 65 cttggaccatctgtcggagggcttaaaattcagttgataacctcatttgaaatttcattc 124
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cttggaccatatgtcagagggcttaaaattcagttgataacctcatttgaaatttcattc 660
Query: 125 aaataagaattgtgctcctgttaatgtagtcatcagttaaaattgacaggataaacagtt 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaataagaattgttctcctgttaatgtagtcatcagttaaaattgacaggataaacagtt 600
Query: 185 ccaaaacaaggagaggagataaagacattaagttgagaatttaagctacaagactatagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ccaaaacaaggagaggagataaagacattaagttgagaatttaagctacaagactatagg 540
Query: 245 ttaaaaacagtttagaatccctgaaatcacaagaaatttccatttaattttctgtaagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttaaaaacagtttagaatccctgaaatcacaagaaatttccatttaattttctgtaagaa 480
Query: 305 aaactctaaatagtgtatttttccaacttagtatcaatttcatgtttaaataaatgtgtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaactctaaatagtgtatttttccaacttagtatcaatttcatgtttaaataaatgtgtg 420
Query: 365 aacatagacaattttctataagaaggatgaaatatatttaaagaaaaggtatcatagagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aacatagacaattttctataagaaggatgaaatatatttaaagaaaaggtatcatagagt 360
Query: 425 actacctaaaaatgagggctcagcggctggtttatagaatttattatattgtttcattga 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 actacccaaaaatgagggctcagcggctggtttatagaatttattatattgtttcattga 300
Query: 485 tctcagaatacatttgctatcaaacaaacccttagtatattatgaagccatactataatg 544
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 299 tctcaggatacatttgctatcaaacaaaccctgagtatattatgaagccatactattatg 240
Query: 545 cctgtagggcactactgttattatttaactgtcagaaaatatttaataatcataataatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cctgtagggcactactgttattatttaactgtcagaaaatatttaataatcataataatt 180
Query: 605 ttttaaaacatcaatctttttccagaaaatgttaactgaaagtcatggggaagaaaatta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttttaaaacatcaatctttttccagaaaatgttaactgaaagtcatggggaagaaaatta 120
Query: 665 gtattacatcagaaatctagctatgcttgcttctgattgacacatttctcctggtgcca 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gtattacatcagaaatctagctatgcttgcttctgattgacacatttctcctggtgcca 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space: 793569
Effective search space used: 793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no512_e15.g1 MSMg01no512_e15.g1 CHROMAT_FILE:
MSMg01no512_e15.g1 PHD_FILE: MSMg01no512_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:23 2005
(572 letters)
>mm_chr1_69692489_69693459
Length = 971
Score = 1056 bits (546), Expect = 0.0
Identities = 563/572 (98%), Gaps = 7/572 (1%)
Strand = Plus / Plus
Query: 1 cactatgtatgccagaagacctcacactcctgaagcccctgcctcagcttgtagtgttag 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 207 cactatgtatgccagaagacctc------ctgaagcccctgcctcagcttgtagtgttag 260
Query: 61 ggttacaagcttgagctgtgatgcctggatagctttgcctgttcggcctttaagtgaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttacaagcttgagctgtgatgcctggatagctttgcctgttcggcctttaagtgaacc 320
Query: 121 caacttttaatttatagaatgaaggaaagccaagaggtgtggcgaacacataaaattcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacttttaatttatagaatgaaggaaagccaagaggtgtggcgaacacataaaattcca 380
Query: 181 tcacaaggatcatagattggaggccagcccaagctacacaatgagaccgtcaaaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacaaggatcatagattggaggccagcccaagctacacaatgagaccgtcaaaaaaaaa 440
Query: 241 aaaaaaaaagaaagaaagaaaatggtgaaatggaagtggatatgatcaaggcacatggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaaaagaaagaaagaaaatggtgaaatggaagtggatatgatcaaggcacatggaa 500
Query: 301 taaatacataaataaattgtcaaagaacaaatatatctgtacgtatgcatacagaaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaatacataaataaattgtcaaagaacaaatatatctgtacgtatgcatacagaaagaa 560
Query: 361 agacaaaaggcaattctaacatttacctcatagatctcttagtgaaatcatgcagacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacaaaaggcaattctaacatttacctcatagatctcttagtgaaatcatgcagacaac 620
Query: 421 ttgtgttttaaaatatatttgattacgttgagtttctttaaaaaaaaaaaaggatcattt 480
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ttgtgttttagaatatatttaattacgttgagtttctttaaaaaaaaaaa-ggatcattt 679
Query: 481 gtgtctgcagttgctaagcagaaaccagcatccctcaaatataaggaaacaaattattaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtgtctgcagttgctaagcagaaaccagcatccctcaaatataaggaaacaaattattaa 739
Query: 541 aaaataagttatttataatctaataaaaataa 572
||||||||||||||||||||||||||||||||
Sbjct: 740 aaaataagttatttataatctaataaaaataa 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space: 540082
Effective search space used: 540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
