BAC Information

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BAC

Clone NameMSMg01-512G09
Chromosome1 (Build37)
Map Location 10,249,687 - 10,250,253
singlet/doubletsinglet
Overlap genenone
Upstream geneSntg1, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
Downstream geneCpa6, LOC433271, C030045D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512G09.T7 (MSMg01no512_g09.b1)MSMg01-512G09.TJ (MSMg01no512_g09.g1)
ACCAG585367AG585368
length739745
length of high quality
(start - end)
587 (63 - 649)577 (51 - 627)
definitionCHROMAT_FILE: MSMg01no512_g09.b1 PHD_FILE: MSMg01no512_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:32 2005CHROMAT_FILE: MSMg01no512_g09.g1 PHD_FILE: MSMg01no512_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGT
ATCCTATTATTTATGTTGTTATTGAAGATCACCCTTAGTCCATGGTGATC
TGATAGGATGCATGGGACAATTTCAGTATTTTTCTATCTGTTGAGGCCTG
TTTTGTGACCAATTATATGGTCAATTTTGGAAAAGGTCCCGTGAGGTGCT
GAGAAGAAGGTAAATCCTTTTGTTTTAGGATAAAATGTTCTGTAGATATC
TGTTAAGTCCATTTGTTTCATAACTTCTGTTAGTTTCACTGTGTCCCTGT
TTAGTTTCTGTTTCCACGATCTGTCCATGGATGAGAGTGGTGTGTTGAAG
TCTCCCACTATTATTGTGTGAGGTGCAATGTGTGGTTTGAACTTTACTAA
AGTGTCTTTAATGAATGTGGCTGCCCTTGCATTTGGAGCATAGATATTCA
GAAATGAGAGTTTCTCTTGGAAGATTTTACCTTTGATGAGTATGATAAGT
CAAATAACCCCATTAAAAAATGAGGTACAGAACTAAACAAAGAATTCTCA
GCTGAGGAATACCGAATGGTTGATAAGCACCTGGAAAAATGTTCAACATC
CTTAATCATCANGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCA
CACCAGTCAAAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
GAGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTTGCCTCCGCGGAATTCTTTTGTGGTGACTGAAAGGACAGGGTCTGCT
GGCGAGTGTCCAGTGCAAGATCCAGATGACAGTAATGGGAGGGGCCAAAC
ATGCAAGACTGCAATGTGGATGGGTCAGTAAAGAGCGCTGATATCGCGGA
AACCTATTGACTGTGATTGGTTAGCACATTACCTCCGATTGGACAGGGAG
TGCTCACAGCACTGGGGGATCTGTAGAAGAAGCTCGTAAAAGGGAGTGGA
AGGTGTAGCTTCTGGTGTCAGCCGGCCAGCTGCCAGAGCTACTCACGTTC
CTTCAGAATTCAGTGTTCTGACTTCTGGGGATATAGAGGAGCACGAAGTG
CGGTGCTTCTCACTTAGAAGTGCAGTGTGCCACACAGGTCATGTCTGTAT
TTTCTCCTTCAGGAGTGTGTGTATGGGGCTGTAAATAAGAGCGAACTATA
GTGATATTACATGTATGGAAATGCTACAATGACCCCCCCCCCCTTTTAGT
TTTGTTTTAAAGACAGAATTTCATGTAGCCCAGTGTAGTGGCTGGTTTTG
TGTATCAACTTGACAGGCTAGAGTTATCACAGAGAAAGGAGCTTCAGTTG
AGGAAATGCCTCCATGAGATCCAGCTGTGGGGCATTTTCTCAATTAGTGA
CAAGGGGGAGGTCCCTTGTGGGTGGTGCCATCTCCGGGCTGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_g09.g1 MSMg01no512_g09.g1 CHROMAT_FILE:
MSMg01no512_g09.g1 PHD_FILE: MSMg01no512_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:32 2005
         (577 letters)



>mm_chr1_10249474_10250453
          Length = 980

 Score = 1050 bits (543), Expect = 0.0
 Identities = 560/567 (98%), Gaps = 3/567 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattcttttgtggtgactgaaaggacagggtctgctggcgagtgtccagtgcaagatcc 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattcttttgtggtgactgaaaggacagggtctgctggcgagtgtccagtgcaagatcc 273

                                                                       
Query: 74  agatgacagtaatgggaggggccaaacatgcaagactgcaatgtggatgggtcagtaaag 133
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 agatgacagtaatgggaggggccaaacatgcaaggctgcaatgtggatgggtcagtaaag 333

                                                                       
Query: 134 agcgctgatatcgcggaaacctattgactgtgattggttagcacattacctccgattgga 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agcgctgatatcgcggaaacctattgactgtgattggttagcacattacctccgattgga 393

                                                                       
Query: 194 cagggagtgctcacagcactgggggatctgtagaagaagctcgtaaaagggagtggaagg 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cagggagtgctcacagcactgggggatctgtagaagaagctcgtaaaagggagtggaagg 453

                                                                       
Query: 254 tgtagcttctggtgtcagccggccagctgccagagctactcacgttccttcagaattcag 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgtagcttctggtgtcagccggccagctgccagagctactcacgttccttcagaattcag 513

                                                                       
Query: 314 tgttctgacttctggggatatagaggagcacgaagtgcggtgcttctcacttagaagtgc 373
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgttctgacttctgggaatatagaggagcacgaagtgcggtgcttctcacttagaagtgc 573

                                                                       
Query: 374 agtgtgccacacaggtcatgtctgtattttctccttcaggagtgtgtgtatggggctgta 433
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 574 agtgtgccacacaggtcatgtctgcattttctccttcaggagcgtgtgtatggggctgta 633

                                                                       
Query: 434 aataagagcgaactatagtgatattacatgtatggaaatgctacaatgaccccccccccc 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aataagagcgaactatagtgatattacatgtatggaaatgctacaatgaccccccccccc 693

                                                                       
Query: 494 ---ttttagttttgttttaaagacagaatttcatgtagcccagtgtagtggctggttttg 550
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cctttttagttttgttttaaagacagaatttcatgtagcccagtgtagtggctggttttg 753

                                      
Query: 551 tgtatcaacttgacaggctagagttat 577
           |||||||||||||||||||||||||||
Sbjct: 754 tgtatcaacttgacaggctagagttat 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 980
Length adjustment: 10
Effective length of query: 567
Effective length of database: 970
Effective search space:   549990
Effective search space used:   549990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)