TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTCTAAACCCATCTGGTCCTAGGCTTTTTTAAATATATTTTTCG
TTATTATGTATTTTCTTTATATACATTTCAAATGCTATCCCTAAAGTTCC
CTATACCCTCCCCCACCCTGCTCCCCTTAATGATTGTTTTTATTTCTTTA
GAAGTTATGGGACTGCTTAGATGGTCTATCTGATCCTGTTTTAAGTTTTG
CACCTGGTATGTGCATAGAAAATTGTCCTTTAAGTCCAGATTTTCTATTT
TAGTTGAGTATAAAATTGTGTAGTAGGGTCTGATGATTTTTTGAATTTCC
ATGGTTTCTCTTTTTATGTCTTCCTTTCATTTCTGATTTTATAAATTTTC
ATACTGTCTCTGTGCCCTTTGGTTAGTCTGCCTAAGGAATTATCTGTCTT
GTTGATTTTCTCAAAGAACCAGCTGCTGGTTTTATTAATTCTTTGTATAG
TTTGTTTTGCTTCTATTTGGTTGATTTCAGCCATGAGTTTAATTATTTCC
TGCTCTCTATTCCTCTTGGGTGTATTTACTTCTTTTTGTTTTTGAGTTCT
CGGGTGGTCAGTAAAGCTGCTAGTGTAAGCTTCTTTATTATCATTATTAT
TATTATTATTATTATTATTATTATTATTTAGAGCTATGTGTTTACTTCTC
ACAGCTGCTTTCATTCTATCCCN

ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGACAGTTGGAGATGCATAAAATCC
TTTCTTTAAATTAAATGATTTTTTTTTAAAGAAAGAAATCAGAACAGAGA
CTAGAGAAGGGAATACACATGGCTTGAGGAGGTAAATGTGGTTGGAGTTA
CAGATAAGTGGTCCAGACTGGCTCTTTTGGAATAGTACACAGCAAATAAG
ATTTCTGTATATGCGACCAAGTTTGATATTTTAAAAAATTGTTTCACTGC
TGCAAGACCACTCAATGAGTAAGAACGCTTGGACTGAAAGCTTGAGCACT
TGAGTATGTAAAAAGTTGAGCACAAGTGTGGGATTCACAGCATTGAAGGG
CAGTAAGTAAACTTGTAGAGTTCACTATGCAACCAGCTGAGCCAAAATAC
TGAGCTTCCAGTTCAGGGAAAGATGGAAAGCCACAGAGAAATGCTTCAGA
TGTCTTGTTCTAGCTATTTTCTGCATTCACATGGGCTTGTACATCAATAT
ACTTGCATGCATGCACCAGATAAACGTATATCACAAACACCACATTCACA
TGAACAGCAAATACACACATTCATACACACACACACACACACACACACAC
ACACACACACACACACACACACACACCTTTCAGCTTCTCACGAACGGGAG
ACACTTTATTCATGAAAGAGAAAGTCACGCCATCCTTATCT

Query= MSMg01no512_h11.g1 MSMg01no512_h11.g1 CHROMAT_FILE:
MSMg01no512_h11.g1 PHD_FILE: MSMg01no512_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:38 2005
         (608 letters)



>mm_chr1_104956289_104957295
          Length = 1007

 Score =  961 bits (497), Expect = 0.0
 Identities = 576/603 (95%), Gaps = 3/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggacagttggagatgcataaaatcctttctttaaattaaatgatttttttttaaagaa 60
           ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 738 aaggacagtcggagatgcataaaaccctttctttaaattaaatga-ttttttttaaagaa 680

                                                                       
Query: 61  agaaatcagaacagagactagagaagggaatacacatggcttgaggaggtaaatgtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 679 agaaatcagaacagagactagagaagggaatacacatggcttgaggaggtagatgtggtt 620

                                                                       
Query: 121 ggagttacagataagtggtccagactggctcttttggaatagtacacagcaaataagatt 180
           ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 619 ggagttatagataagtggtccagacaagctcttttggaatagtacacagcaaataagatt 560

                                                                       
Query: 181 tctgtatatgcgaccaagtttgatattttaaaaaattgtttcactgctgcaagaccactc 240
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctgtatacgcgaccgagtttgatattttaaaaaattgtttcactgctgcaagaccactc 500

                                                                       
Query: 241 aatgagtaagaacgcttggactgaaagcttgagcacttgagtatgtaaaaagttgagcac 300
           |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 499 aatgagtaagaatgcttggtctgaaagattgagcacttgagtatgtaaaaagttgagcac 440

                                                                       
Query: 301 aagtgtgggattcacagcattgaagggcagtaagtaaacttgtagagttcactatgcaac 360
           || |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 439 aactgtgggattcacagtattggagggcagcaagtaaacttgtagagttcactatgcaac 380

                                                                       
Query: 361 cagctgagccaaaatactgagcttccagttcagggaaagatggaaagccacagagaaatg 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 379 cagctgagccaaaatactgagcttccagttcagtgaaagatggaaagccacagagaaatg 320

                                                                       
Query: 421 cttcagatgtcttgttctagctattttctgcattcacatgggcttgtacatcaatatact 480
           |||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 319 cttcagatatcttgttctagctatttcctacattcacatgggcttgtgcatcaatatact 260

                                                                       
Query: 481 tgcatgcatgcaccagataaacgtatatcacaaacaccacattcacatgaacagcaaata 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgcatgcatgcgccagataaacgtatatcacaaacaccacattcacatgaacagcaaata 200

                                                                       
Query: 541 cacacattcatacacacacacacacacacacacacacacacacacacacacacacacaca 600
           ||||||  || ||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 199 cacaca--caaacacacacacacacacacacaaacatacacacacacacacacacacaca 142

              
Query: 601 cac 603
           |||
Sbjct: 141 cac 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space:   596206
Effective search space used:   596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)