Query= MSMg01no512_l16.b1 MSMg01no512_l16.b1 CHROMAT_FILE:
MSMg01no512_l16.b1 PHD_FILE: MSMg01no512_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:59 2005
(528 letters)
>mm_chr1_76255579_76256506
Length = 928
Score = 754 bits (390), Expect = 0.0
Identities = 406/414 (98%), Gaps = 5/414 (1%)
Strand = Plus / Minus
Query: 5 gaattcaacctgactgaaatggtgcttccaccaacatctgtgcctgtaacatttaaatga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaattcaacctgactgaaatggtgcttccaccaacatctgtgcctgtaacatttaaatga 436
Query: 65 tctcgggtatttgattaaggacgttcaaatgtgtgcctatcacctctctctacagcaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tctcgggtatttgattaaggacgttcaaatgtgtgcctatcacctctctctacagcaatt 376
Query: 125 ccatacgtgactgtatgtgggcatggcattcctgaaactcagtgccctccactagcttca 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccatacgtgactctatgtgggcatggcattcctgaaactcagtgccctccactagcttca 316
Query: 185 agtcccttgaagccagagccaagccttttctatccctgagcaccagtgctagtatctctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agtcccttgaagccagagccaagccttttctatccctgagcaccagtgctagtatctctg 256
Query: 245 gtcacttagtaaatactctataaattttaaaggaacatagccctcatggcaaaggaagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtcacttagtaaatactctataaattttaaaggaacatagccctcatggcaaaggaagaa 196
Query: 305 aggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaagga 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aggaagaaaggaa-----gaagaaaggaagaaaggaagaaaggaagaaaggaagaaagga 141
Query: 365 agaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaag 418
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 140 agaaaggaagaaaggaagaaaggaagaaaggaagaaagaaagaaagaaagaaag 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 155
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_l16.g1 MSMg01no512_l16.g1 CHROMAT_FILE:
MSMg01no512_l16.g1 PHD_FILE: MSMg01no512_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:59 2005
(645 letters)
>mm_chr1_76144166_76145210
Length = 1045
Score = 1141 bits (590), Expect = 0.0
Identities = 632/646 (97%), Gaps = 5/646 (0%)
Strand = Plus / Plus
Query: 1 gccttagggttgtcttggcctcatttctttataaccaggtgaagcccttctctattaatt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccttaggattgtcttggcctcatttctttataaccaggtgaagcccttctctattaatt 260
Query: 61 cctttccacaagttggctccagaggtggcccagacacattccaagggctctttcatttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttccacaagttggctccagaggtggcccagacacattccaagggctctttcatttcc 320
Query: 121 aagtttatagttctctggagtctgaggggtttgaggtcaagaagaaccaggggggctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtttatagttctctggagtctgaggggtttgaggtcaagaagaaccaggggggctgaa 380
Query: 181 gatggtttaattgatggattacagaggctgctgcaggtactttcaacaaaggggcatttt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatggtttaattgatgaattacagaggctgctgcaggtactttcaacaaaggggcatttt 440
Query: 241 atagagggactagagtgcttataaaatagcttgagcaaaaactaccaggcttgattctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagagggactagagtgcttataaaatagcttgagcaaaaactaccaggcttgattctta 500
Query: 301 agaattcttactacttctagctaacatttcatccggccggtgattcagaactcaggatgc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 agaattcttactacttctagctaacatttcatccggctggtgattcagaactcaggatgc 560
Query: 361 tcagaaccaggaagttactcccactgccattaagctgtgtagcccaagaaagaggaggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagaaccaggaagttactcccactgccattaagctgtgtagcccaagaaagaggaggaa 620
Query: 421 ggcttggaatagggctgaagaaaatcatcatgttatctgaatcgtgttaccaggagtaag 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcttggaatagggctgaagaaaagcatcatgttatctgaatcgtgttaccaggagtaag 680
Query: 481 tggcaagaggaacagtaaattactcttgaatttgaacttttaagggattctgctatgctt 540
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 681 tggcaagaggaacagtaaattactcttgaatttgaacttttaagggatgcagctatgctt 740
Query: 541 caagatatctatctatttatctatctatctatctatctatctatctatctatctatctat 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caagatatctatctatctatctatctatctatctatctatctatctatctatctatctat 800
Query: 601 ctatctatc-tatctatc-tatctatctatctatctatctatctat 644
||||||| | |||||| | ||||||| |||| |||||| |||||||
Sbjct: 801 ctatcta-catatcta-catatctatatatc-atctatatatctat 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 175
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
