BAC Information

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BAC

Clone NameMSMg01-512M03
Chromosome1 (Build37)
Map Location 34,121,875 - 34,122,348
singlet/doubletsinglet
Overlap geneDst
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneLOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512M03.T7 (MSMg01no512_m03.b1)MSMg01-512M03.TJ (MSMg01no512_m03.g1)
ACCAG585643AG585644
length743733
length of high quality
(start - end)
500 (64 - 563)478 (71 - 548)
definitionCHROMAT_FILE: MSMg01no512_m03.b1 PHD_FILE: MSMg01no512_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:01 2005CHROMAT_FILE: MSMg01no512_m03.g1 PHD_FILE: MSMg01no512_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ATTATCGTTCTCAGGGAAATAAATAATGTCTAAGCACAGAAAAGGTTTTT
GATAAAATCAAGCATACCTCCGTGAGGAAGAGATTTCCCCGAGGAAACTC
AGACTAGAAGGGACATGTGCCATCATAGTAACAGCTCCAGGTGAAACCGC
GTAGTCTCAGCGTTACGTTGACTAGGAGAAAACTCCAATCATTTCCACTA
AAGTCAGGAACAAGTCGAGGATGCCTGCTCCTCCACTCCCCCTCAGTATA
GCCCTGGAGTTCTTATCTAGAGCAGCAAGACGAGAGAAGTGAAAAGGTTA
CGGATTGGAAAGGAAGATGTCAGAGCACCGTCCGTATTGGGAAGTGTCAT
GATTCTGTACATAGGAGACTCTTAGATCTGCCAAACACTTTCAACAAAGT
TGGGAGGGTACATAGTTAACTTTCAGAGATCAGTAGCTTTCCTGCGTACT
AATGTCAGATATACCAAGAAAGAGATTAGGACAACAACCCCATTTAAAGT
ACTTTCAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATATAA
TAAAATACAATAAAATTAATTAAAATACTTTGGAATGCACTTAACTTAGT
GAAGGGCCTCTACAAGGAAAATATAGAAACACTGAAGAAAGAAGTTGACC
AATATGTTAGGAGTAGTGGTTAGCCTTGCACTACGTACTTATN
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTACACACTTTATACCTTTAAAATGCCAAGC
AATTTTGGTAACTTCTCTTTTTTAAAAAAAATTTTTTTAAAGGATAAAAT
ATTTCATGACTATCTAAATGACTCAGCCAGAAAGCTCTGATCATTGTCTT
TGAGCCACTAGGGAGAGTGTTACAGAGACAAGACAATGCTAAGCCATGGC
AATACAGGCTCATGAAGCTGAACAGAGCCAGCCGCCCTCCTGGCTCACCG
TATGTGAGGAGGAAGACCACAGCAGTGCGTCAGACCTTCAGTTATGACCA
GTGGATATGAACGAAACTTTACTATGGGGGAGGCAGGGGGGTGGGGGGGA
GAGACAGTCAATTCTGAGCCTTCCAAACATGAACACTTTCCATGAAACTG
CACTGATAACAATCCAAATGTAAACACAGTCTGCAAAGACAAAGTTCAGA
TGGAATCATATGGTGTTTATTAATAAGCCTATGGAGTGAATGAGGGCAAA
CAGAGCAAGGCCTAAGCATCTTTTTAAGGAAGACGCCACCGTGAGCAATG
AAATATCCAAGGAAACACATCCCAGGTGCTCCCTCAGGCACACCATCCCT
GGTCTCTCCATAGACAGAGTCTCTAGGGGAAGGATCAGCCTTTCTAGAAG
CCACATGAATTCTGTTGAGTCCCATGAGCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_m03.g1 MSMg01no512_m03.g1 CHROMAT_FILE:
MSMg01no512_m03.g1 PHD_FILE: MSMg01no512_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:02 2005
         (478 letters)



>mm_chr1_34121604_34122481
          Length = 878

 Score =  880 bits (455), Expect = 0.0
 Identities = 470/475 (98%), Gaps = 2/475 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   cactttatacctttaaaatgccaagcaattttggtaacttctcttttttaaaaaaaattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cactttatacctttaaaatgccaagcaattttggtaacttctcttttttaaaaaaaattt 686

                                                                       
Query: 65  ttttaaaggataaaatatttcatgactatctaaatgactcagccagaaagctctgatcat 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttaaaaggataaaatatttcatgactatctaaatgactcagccagaaagctctgatcat 626

                                                                       
Query: 125 tgtctttgagccact-agggagagtgttacagagacaagacaatgctaagccatggcaat 183
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtctttgagccactaagggagagtgttacagagacaagacaatgctaagccatggcaat 566

                                                                       
Query: 184 acaggctcatgaagctgaacagagccagccgccctcctggctcaccgtatgtgaggagga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaggctcatgaagctgaacagagccagccgccctcctggctcaccgtatgtgaggagga 506

                                                                       
Query: 244 agaccacagcagtgcgtcagaccttcagttatgaccagtggatatgaacgaaactttact 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaccacagcagtgcgtcagaccttcagttatgaccagtggatatgaacgaaactttact 446

                                                                       
Query: 304 atgggggaggcaggggggtgggggggagagacagtcaattctgagccttccaaacatgaa 363
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 atgggggaggcaggggggtggggggg-gagacagtcaattctgagccttccaaacatgaa 387

                                                                       
Query: 364 cactttccatgaaactgcactgataacaatccaaatgtaaacacagtctgcaaagacaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cactttccatgaaactgcactgataacaatccaaatgtaaacacagtctgcaaagacaaa 327

                                                                  
Query: 424 gttcagatggaatcatatggtgtttattaataagcctatggagtgaatgagggca 478
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 326 gttcagatggaatcatatggtgtttattaataagtctatggagtgaatgagggca 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)