BAC Information

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BAC

Clone NameMSMg01-512O20
Chromosome1 (Build37)
Map Location 80,021,738 - 80,218,743
singlet/doubletdoublet
Overlap geneLOC100039325, A830043J08Rik
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
Downstream gene2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512O20.T7 (MSMg01no512_o20.b1)MSMg01-512O20.TJ (MSMg01no512_o20.g1)
ACCAG585773AG585774
length744768
length of high quality
(start - end)		703 (38 - 740)497 (70 - 566)
definitionCHROMAT_FILE: MSMg01no512_o20.b1 PHD_FILE: MSMg01no512_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:15 2005CHROMAT_FILE: MSMg01no512_o20.g1 PHD_FILE: MSMg01no512_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,218,108 - 80,218,743)(80,021,738 - 80,022,234)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
CTGTAGACCAGGCTGGCTTTGAACTCAGAAATCTGCCTGCCTCTGCCTCC
CAAGTGCTGAGATTAAAGGCGTGTGTCACCACTGCCCGGCAATATAGCAG
TATTGAAAGAAATTGGAAATTCAACACATACAGGTCGCCTGCATTAAGAA
AAAGAAATGCAGGCCTGTAATCTCAGCTCTCAGGAATTGGAGGCTGGAAG
GATCAGGAAATTAAGGTCATCTTTAGCAAGTTGAAGGCTAGCCTGGGCTA
TGTGTGTGAACAAAACCAACCAGTCAATGAATACATAAGAGAACTACACT
GTTTGGCCTGGACTCAGAGCCAGGAATGTGTTGGTCCATTTTTTTGTGCT
GACAACACAGTGACACAGGAGAATGCTGTATGGTGGCCCATTTGGGAGCA
AGGAAGCAGTGTGATCTTGTGTGTAACACAGCAGAGATCACAACTCGGGT
TCTCTGATATCAACTATCTCCCAGCCCAATTTCTAGATGTGTCTATTCAA
GCAATATTATCTATTGTTTATACCTACACTGGCTCACTTACAAACCATCT
CCATTCTTCTGATGTGTGAGCTTACAGAATTGAACTGATAGATTTAGGAA
GCTTCTAATATTGACACATATTTAAAGAACAACTCAAGTCCAATTCATGG
CTTATAAAAGTTCATTTACGAAACTCAATAGAGCAAGATTCCCT

ATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAACTGCTATCAGAAGAGGGTGAGCTTAGA
AGGAAGTTTAAATTCTTGGAAATCTCAGAAATGATGAGCCAAAACGAAGA
CAAAAACCTGTTATGTGCTTCATAACCATGCGAGAGTTTGGCACATGTCC
TTACTGTAGGCTTTGAGTCATGATCTTCCTTTTTTCAAAGTGTCCAATGA
CGTCTCAATCTACAAATCTCTCAAGAATTTGACTCCCTAATGTAACCACG
CTCCATGTTCCCCATCTTCTTCTATCCTAGACACGTTGTTCTGGTCCTTG
AATATATCTTGTATATTCCTGAAGAGCTTTTCCAGTGAAGAACTTTGTTC
TTTACTTTTTTGGATGTTTTCTTCAAAGGACTCATCCTCAGAACACACTT
TACCAGCTACTACATATATAGAAGACATAGCATCCAGTCCATGTCTTTCT
ATAGCTCTAAAAAACATCATATTATATGTTTATTTACTCAATGGCCTACT
TCATTGTTTTTCACACACACACAACACCAGAAAATAGACTCTCTGATGGT
AGACCTAGTTTTCTGTTTCATTCACTGAGGTATCTCTAAGAACTTAAAGT
AATACCTGGCACAGTCAATACTTAAAGCTTGGGCAATACTCGTTAAAAAA
TAAATGAATGAGTTTTGTGAGTATTTTAAAACACCTCACCCAAGAAGTTA
ATCAAAGGGAGAAAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_o20.b1 MSMg01no512_o20.b1 CHROMAT_FILE:
MSMg01no512_o20.b1 PHD_FILE: MSMg01no512_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:15 2005
         (703 letters)



>mm_chr1_80217641_80218743
          Length = 1103

 Score = 1183 bits (612), Expect = 0.0
 Identities = 630/636 (99%)
 Strand = Plus / Minus

                                                                        
Query: 68   tgctgagattaaaggcgtgtgtcaccactgcccggcaatatagcagtattgaaagaaatt 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 tgctgagattaaaggcgtgtgtcaccactgcccggcaatatagcagtattgaaagaaatt 1044

                                                                        
Query: 128  ggaaattcaacacatacaggtcgcctgcattaagaaaaagaaatgcaggcctgtaatctc 187
            |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 1043 ggaaattcaacacatacaggtcgcctacattaagaaaaagaaatgcagacctgtaatctc 984

                                                                        
Query: 188  agctctcaggaattggaggctggaaggatcaggaaattaaggtcatctttagcaagttga 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  agctctcaggaattggaggctggaaggatcaggaaattaaggtcatctttagcaagttga 924

                                                                        
Query: 248  aggctagcctgggctatgtgtgtgaacaaaaccaaccagtcaatgaatacataagagaac 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  aggctagcctgggctatgtgtgtgaacaaaaccaaccagtcaatgaatacataagagaac 864

                                                                        
Query: 308  tacactgtttggcctggactcagagccaggaatgtgttggtccatttttttgtgctgaca 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  tacactgtttggcctggactcagagccaggaatgtgttggtccatttttttgtgctgaca 804

                                                                        
Query: 368  acacagtgacacaggagaatgctgtatggtggcccatttgggagcaaggaagcagtgtga 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  acacagtgacacaggagaatgctgtatggtggcccatttgggagcaaggaagcagtgtga 744

                                                                        
Query: 428  tcttgtgtgtaacacagcagagatcacaactcgggttctctgatatcaactatctcccag 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  tcttgtgtgtaacacagcagagatcacaactcgggttctctgatatcaactatctcccag 684

                                                                        
Query: 488  cccaatttctagatgtgtctattcaagcaatattatctattgtttatacctacactggct 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683  cccaatttctagatgtgtctattcaagcaatattatctattgtttatacctacactggct 624

                                                                        
Query: 548  cacttacaaaccatctccattcttctgatgtgtgagcttacagaattgaactgatagatt 607
            ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 623  cacttacgaaccatttccattcttctgatgtgtgagcctacagaattgaactgatagatt 564

                                                                        
Query: 608  taggaagcttctaatattgacacatatttaaagaacaactcaagtccaattcatggctta 667
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563  taggaagcttctaatattgacacatatttaaagaacaacttaagtccaattcatggctta 504

                                                
Query: 668  taaaagttcatttacgaaactcaatagagcaagatt 703
            ||||||||||||||||||||||||||||||||||||
Sbjct: 503  taaaagttcatttacgaaactcaatagagcaagatt 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no512_o20.g1 MSMg01no512_o20.g1 CHROMAT_FILE:
MSMg01no512_o20.g1 PHD_FILE: MSMg01no512_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:15 2005
         (497 letters)



>mm_chr1_80021538_80022434
          Length = 897

 Score =  938 bits (485), Expect = 0.0
 Identities = 494/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaactgctatcagaagagggtgagcttagaaggaagtttaaattcttggaaatctcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaactgctatcagaagagggtgagcttagaaggaagtttaaattcttggaaatctcaga 260

                                                                       
Query: 61  aatgatgagccaaaacgaagacaaaaacctgttatgtgcttcataaccatgcgagagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aatgatgagccaaaacgaagacaaaaacctgttatgtgcttcataaccatgtgagagttt 320

                                                                       
Query: 121 ggcacatgtccttactgtaggctttgagtcatgatcttccttttttcaaagtgtccaatg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcacatgtcctcactgtaggctttgagtcatgatcttccttttttcaaagtgtccaatg 380

                                                                       
Query: 181 acgtctcaatctacaaatctctcaagaatttgactccctaatgtaaccacgctccatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgtctcaatctacaaatctctcaagaatttgactccctaatgtaaccacgctccatgtt 440

                                                                       
Query: 241 ccccatcttcttctatcctagacacgttgttctggtccttgaatatatcttgtatattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccatcttcttctatcctagacacgttgttctggtccttgaatatatcttgtatattcc 500

                                                                       
Query: 301 tgaagagcttttccagtgaagaactttgttctttacttttttggatgttttcttcaaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaagagcttttccagtgaagaactttgttctttacttttttggatgttttcttcaaagg 560

                                                                       
Query: 361 actcatcctcagaacacactttaccagctactacatatatagaagacatagcatccagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcatcctcagaacacactttaccagctactacatatatagaagacatagcatccagtc 620

                                                                       
Query: 421 catgtctttctatagctctaaaaaacatcatattatatgtttatttactcaatggcctac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgtctttctatagctctaaaaaacatcatattatatgtttatttactcaatggcctac 680

                            
Query: 481 ttcattgtttttcacac 497
           ||||||||| |||||||
Sbjct: 681 ttcattgttgttcacac 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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