CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGCACATTCTTTTTTTTCCCTTTCTTTCTTTTTTTCTTTTTGTC
TCCCTCATCATTGAATTGGCTGTTTATCTTATGTCTATGGCTACTGTGTT
GTCTTCATTGGTAGATTTTTCGATGATAACGTACTTACACACAGATAAGT
CATGTAAGGTTTTACACTGTAGTACTGCTTTATTGCTATTATTATACTGC
TTTTCAAGCTTGAGAGAGGACAGAGCCAGTCATGCCCCTCAGAGATGAAG
TGGTTGGAAAAGCCATGTGTGGCATAACTTCTCTTGGTTTTCTTTGGTGA
GGGAAGTTATTCTTTCTAATACTGAGTTTAACAAAGGACCTTGGGAATAA
ATATATAATAGAAACCTGGTGGCATGTGACTAAGTATCACTTTGGTTCCC
TTTGGAGGCTCAGAGGTACATGTAGAGGTATTTTTGCTATGAAACATTCC
TTACTGCTTTATGTTTTAAACTGGAATTGTTTTATATATATATGGTATTT
TCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCCATACCTTCCCC
CCTACTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTG
TACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGA
TGGCCGACTAGGCCATCTTCTGCTACN

ACCACTCTCTCTCTATCTCTCCCGTCCTCTCCCTCTACCATCACGCACAC
ACATTGCTTCACATCTCCACATCCCCTCTTTGCCCCCCTCCCTTTTCTCC
TAATTCTTCCCCTCTAACAATTACAGAAAATCACCTTTTCTTTTCACATT
ACTAGGTGCTAGCATCTCGGCTCCGCGGCACCACAACTTCTTTTTTCTTA
CTCCACGAATTAATTCGTCTCAGCACTCTTCCTCTCTCCCATACTTTTCC
CCATATCGCGAGGCAATAGACATCGCGACAGAGTCTCTCTATATTAAAGC
TCTTGGCGCTGATCACTCTACCCAACAACTCTATTATACAACTTGTCTCC
ATCTTTATATATNTCCGCCAAAGTNATAATGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
NCGGGAATTCACCCGGGTATTCTTGGGTACACCCTGCGGCAGGCTCTCAA
GGATGTTTTGTTGGGCTTTAAATGAAGGAAAATCAAGGGGGCAAGAAACA
AACGAACTTTAGGCTGCCAGAGCCCGCGGGCGGCCTCTTTGGGGGAAATG
GGAAGCCAAAAACCCCGGTTTCCCCTAAAAAAGGAGGGGGTATATACCCC
AAAAAATTTTTTCTTCTGGGGGGGCCGGGGGGGGAGAAAAAAATTCCCCT
CCCAAACCACGG

Query= MSMg01no512_p07.b1 MSMg01no512_p07.b1 CHROMAT_FILE:
MSMg01no512_p07.b1 PHD_FILE: MSMg01no512_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:17 2005
         (661 letters)



>mm_chr1_143474342_143475402
          Length = 1061

 Score = 1075 bits (556), Expect = 0.0
 Identities = 650/722 (90%), Gaps = 64/722 (8%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatgcacattcttttttttccctttctttctttttttctttttgtctccctca 63
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggaattcaacgcacattctttgttttccctttctttctttttttctttttgtctccctca 667

                                                                       
Query: 64  tcattgaattggctgtttatcttatgtctatggctactgtgttgtcttcattggtagatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcattgaattggctgtttatcttatgtctatggctactgtgttgtcttcattggtagatt 607

                                                                       
Query: 124 tttcgatgataacgtacttacacacagataagtcatgtaaggttttacactgtagtactg 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tttcgatgataacatacttacacacagataagtcatgtaaggttttacactgtagtactg 547

                                                                       
Query: 184 ctttattgctattattatactgcttttcaagcttgagagaggacagagccagtcatgccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctttattgctattattatactgcttttcaagcttgagagaggacagagccagtcatgccc 487

                                                                       
Query: 244 ctcagagatgaagtggttggaaaagccatgtgtggcataacttctcttggttttctttgg 303
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 486 ctcagagatgaagtggttggaaaagccatgtgtggcggaacttctcttggttttctttgg 427

                                                                       
Query: 304 tgagggaagttattctttctaatactgagtttaacaaaggaccttgggaataaatatata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgagggaagttattctttctaatactgagtttaacaaaggaccttgggaataaatatata 367

                                                                       
Query: 364 atagaaacctggtggcatgtgactaagtatcactttggttccctttggaggctcagaggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atagaaacctggtggcatgtgactaagtatcactttggttccctttggaggctcagaggt 307

                                                                       
Query: 424 acatgtagaggtatttttgctatgaaacattccttactgctttatgt--tttaaactgga 481
           ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||
Sbjct: 306 acatgtagaggtatttttgctatgaaacattccttactgctttatatcttttaaactaga 247

                                                                       
Query: 482 attgtt-t---------------------------------------------------- 488
           |||||| |                                                    
Sbjct: 246 attgttatatatatatatatatatatgtatatatatatatatatatatatatatatatat 187

                                                                       
Query: 489 ---------tatatatatatggtattttcttcatttacatttcaaatgctatcccaaaag 539
                    ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 186 atatatatatatatatatatgggattttcttcatttacatttcaaatgctatcccaaaag 127

                                                                       
Query: 540 tcccccataccttcccccctactcccctacccacccactcccacttcttggccctggcat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tcccccataccttcccccctactcccctacccacccactcccacttcttggccctggcat 67

                                                                       
Query: 600 tcccctgtactggggcatataaagtttgcaataccaaggggcctctcttcccaaagatgg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tcccctgtactggggcatataaagtttgcaataccaaggggcctctcttcccaaagatgg 7

             
Query: 660 cc 661
           ||
Sbjct: 6   cc 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)