Query= MSMg01no513_c14.b1 MSMg01no513_c14.b1 CHROMAT_FILE:
MSMg01no513_c14.b1 PHD_FILE: MSMg01no513_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:34 2005
(661 letters)
>mm_chr1_23606627_23607687
Length = 1061
Score = 1065 bits (551), Expect = 0.0
Identities = 586/599 (97%), Gaps = 4/599 (0%)
Strand = Plus / Plus
Query: 1 taacctatatttattatcaccatcatagaagatgttatcaagactatttatataatttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 taacctatatttattatcaccatcatagaagatgttatcaagactatttatataatttat 256
Query: 61 aagtccttgtaaaaggttaaagagaagaactccttgttcagaaacaattttaaggatttt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagtccttgtaaaaggttaaaaagaagaactccttgttcagaaacaattttaaggatttt 316
Query: 121 taagtcactacaacagaccactaatcccatggattatttgaagttgaggctagagcatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taagtcactacaacagaccactaatcccatggattatttgaagttgaggctagagcatta 376
Query: 181 gacttggttcatgatcatgaagttgtctgtgaaagctaaaaataaaacattactttcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gacttggttcatgatcatgaagttgtctgtgaaagctaaaaataaaacattactttcatc 436
Query: 241 atctctttctaaaatatctctaacatgtactctctaacacctcaaaagggaaagtcaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atctctttctaaaatatctctaacatgtactctctaacacctcaaaagggaaagtcaaaa 496
Query: 301 tataagattatatgatgacttagtatgtaaaatctctctggtctcatcattaacctatca 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 tataagattatatgatgacttagtatgtgaaatctctctggtctcatcattaacctatca 556
Query: 361 ttcttcaagtacttttatagatagacagatag--a--tagatagatagatagatagatag 416
||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 557 ttcttcaagtactttgatagatagatagataggtaagtagatagatagatagatagatag 616
Query: 417 atagatagatagatagatggcttataaaaagatagttgataggtagataaattaatgata 476
|||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct: 617 atagatagatagatagatagcttataaaaagataggtgataggtagataaattactgata 676
Query: 477 gataataatagatgacagcatatatgatagatgctttcatacatcaatacaagattggca 536
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gataataatagatggcagtatatatgatagatgctttcatacatcaatacaagattggca 736
Query: 537 catgctagatagatgaacacaggggccacgtacagaaagatgactaaatagaaatgatg 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 catgctagatagatgaacacaggggccacgtacagaaagatgactaaatagaaatgatg 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_c14.g1 MSMg01no513_c14.g1 CHROMAT_FILE:
MSMg01no513_c14.g1 PHD_FILE: MSMg01no513_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:34 2005
(241 letters)
>mm_chr1_23770830_23771470
Length = 641
Score = 410 bits (212), Expect = e-119
Identities = 233/240 (97%)
Strand = Plus / Minus
Query: 1 agtgtcttgctcacacagtatctcccgaacgtccagttttctgggggtaatggaggagct 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtgtcctgctcacacagtatctcccgaacgtccagttttctgggggtaatggaggagct 314
Query: 61 gggaggccagggagtctttaggaggctggatgtcgaggaattttaggtggagatctacag 120
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggaagtcagggagtctttaggaggctggatgtcgaggaattttaggtggagatctacag 254
Query: 121 tcccacggggcaaagaaattaagattttattcagctgtaactaagtgttgaggagttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct: 253 tcccacggggcaaagaaattaagattttattcagctgtaactaagtgttgaggcgtgcgg 194
Query: 181 gagagagaggaagaggaaaagagagggagagaaaggggggaggaagggaaagagggaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 193 gagagagaggaagaggaaaagagagggagagaaaggggggaggaagggaaagaggaaggg 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
