Query= MSMg01no513_d08.b1 MSMg01no513_d08.b1 CHROMAT_FILE:
MSMg01no513_d08.b1 PHD_FILE: MSMg01no513_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:37 2005
(714 letters)
>mm_chr1_10098781_10099894
Length = 1114
Score = 1272 bits (658), Expect = 0.0
Identities = 695/710 (97%), Gaps = 5/710 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaggccagtcagggtctcaggaaacaaagcatttacatataatataatgacatt 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcaaggccagtcagggtctcaggaaacaaagcatttacatataatataatgatatt 264
Query: 65 gtgcagttaaatggccctttttgtattaaacaggtagcattacagtagtgaaatattcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgcagttaaatggccctttttgtattaaacaggtagcattacagtagtgaaatattcaa 324
Query: 125 agtattcccaaagaaggcacttaagcattggcttctcactgagaagaagatggagtcaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtattcccaaagaaggcacttaagcattggcttctcactgagaagaagatggagtcaga 384
Query: 185 tgactgggatgtctgctcagaagggacttgggtttctctacacgtatacacgtacatctc 244
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 tgactggggtgtctgctcagaagggacttgggtttctctacacgtatacacggacatctc 444
Query: 245 agtgtggtctgaaaacattttttccttttgtataaattttttttactgggggactgggta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgtggtctgaaaacattttttccttttgtataaattttttttactgggggactgggta 504
Query: 305 gagcagagcatgggtgtcttatcagagcagtgagtgtctgtagggaaatatcttacagag 364
||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct: 505 gagcagagcatgggtgtcttatcagagcagtgaatgtctgcagggaaataccttacagag 564
Query: 365 catgtgacagataacagagcctcacagatgtcagacactctcaggtcagcaggttgagtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgtgacagataacagagcctcacagatgtcagacactctcaggtcagcaggttgagtg 624
Query: 425 tggtgcagagtcagcagtggtaattctgttaccatgacaacagcaactcaaaatgtaagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggtgcagagtcagcagtggtaattctgttaccatgacaacagcaactcaaaatgtaagt 684
Query: 485 tattttctaagtttatttaacacatctaccatggggtaaggtacaattatcagatgtttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tattttctaagtttatttaacacatctaccatggggtaaggtacaattatcagatgtttt 744
Query: 545 taaatcactttattgttcacaaaatacttttacatgtataggatgttgtcttagtcaggg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taaatcactttattgttcacaaaatacttttacatgtataggatgttgtcttagtcaggg 804
Query: 605 tttctattcctgcacaaacatcatgaccaagaagcagttggggaggaaagggtttattca 664
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 805 cttctattcctgcacaaacatcatgaccaagaagcagttggggaggagagggtttattta 864
Query: 665 gcttacacttccacactgctctttatcaccaaaggaagtcaggactggaa 714
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 865 gcttacacttt-----tgctctttatcaccaaaggaagtcaggactggaa 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no513_d08.g1 MSMg01no513_d08.g1 CHROMAT_FILE:
MSMg01no513_d08.g1 PHD_FILE: MSMg01no513_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:37 2005
(587 letters)
>mm_chr1_10132135_10133121
Length = 987
Score = 625 bits (323), Expect = 0.0
Identities = 332/335 (99%)
Strand = Plus / Minus
Query: 253 agtgggagctggagagacagctcaaaggttaacaatatttgctgttcttggcagaagacc 312
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 987 agtgggagctggagagacagctcaaaggttaagaatatttgctgttcttggcagaagacc 928
Query: 313 cagtttcatttctagcaccctgtctggcagttcatagcttcctgtatctctggttccaag 372
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 927 cagtttcatttctagcaccctgtctggcagttcatagcttcctatatctctggttccaag 868
Query: 373 ggaattaacaatcctatagcctgtgtgggtacctgcatacacatggttcacatacaaacg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ggaattaacaatcctatagcctgtgtgggtacctgcatacacatggttcacatacaaacg 808
Query: 433 agcaggcataaacatgtatatgtaaatattaaagagagcagaattgggagggatcgttga 492
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 807 agcaggcataaacatgtatatgtaaatattagagagagcagaattgggagggatcgttga 748
Query: 493 gtcttcagtttactaaaactggttaaatgtatgttatggctgtttgttttccaaagagag 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gtcttcagtttactaaaactggttaaatgtatgttatggctgtttgttttccaaagagag 688
Query: 553 atgcagtagacttcgatgttcgagttgatactcaa 587
|||||||||||||||||||||||||||||||||||
Sbjct: 687 atgcagtagacttcgatgttcgagttgatactcaa 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
