Query= MSMg01no513_f03.b1 MSMg01no513_f03.b1 CHROMAT_FILE:
MSMg01no513_f03.b1 PHD_FILE: MSMg01no513_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:46 2005
(587 letters)
>mm_chr1_44613078_44614064
Length = 987
Score = 462 bits (239), Expect = e-134
Identities = 245/247 (99%)
Strand = Plus / Plus
Query: 5 gaattcacgatagttacagaaacgaattgcatggattctgtgagccctggtccctaaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgatagttacagaaacgaattgcatggattctgtgagccctggtccctaaata 264
Query: 65 tatgaaaggctggtggatctagacgtgtttgcattaatgcatttatagatcaggaagttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgaaaggctggtggatctagacgtgtttgcattaatgcatttatagatcaggaagttt 324
Query: 125 atgtttgttcccatgggatactaaatatattcaaattggaagaagaaaaatgacataaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtttgttcccatgggatactaaatatattcaaattggaagaagaaaaatgacataaac 384
Query: 185 ttttaacatatcaattgctctgcttccaagcagcagagatattaaattgaatcatacctt 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttacatatcaattgctctgcttccaagcagcagagatattaaattgaatcatacctt 444
Query: 245 tcttttc 251
| |||||
Sbjct: 445 tattttc 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_f03.g1 MSMg01no513_f03.g1 CHROMAT_FILE:
MSMg01no513_f03.g1 PHD_FILE: MSMg01no513_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:46 2005
(616 letters)
>mm_chr1_44633003_44634015
Length = 1013
Score = 1120 bits (579), Expect = 0.0
Identities = 604/613 (98%), Gaps = 3/613 (0%)
Strand = Plus / Minus
Query: 1 acacttgtatttaagacaattttaactatactttggagttcatcatgacctggtcaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 acacttgtatttaagacaattttaactatactttggagttcatcatgacctggtcaggaa 751
Query: 61 aaatatttcttagaaaattatggtgaattcctaaatgctacttaacccaaatactttatc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 750 aaatatttcttagaaaattatggtgaaatcctaaatgctacttaacccaaatactttttc 691
Query: 121 tgagtaactgttctatgttcccctcccaccaggaaatacgagatattcctagaacatttg 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgagtaactgttccatgttcccctcccaccaggaaatacgagatattcctagaacatttg 631
Query: 181 gcaatgctgatttaaatatttgggaacttcaggagacgttctgcatcgtgccaactgagc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 630 gcaatgctgatttaaatatttgggaacttcaggagacattctgcatcgtgccaactgagc 571
Query: 241 aatttctcctagcaccaagcaagcagagcccagggctatttctaaatgtctaaagtgcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aatttctcctagcaccaagcaagcagagcccagggctatttctaaatgtctaaagtgcat 511
Query: 301 agaatgtctccctagacaacaaagtgatacaactacacttatcaccaccaaacctagtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agaatgtctccctagacaacaaagtgatacaactacacttatcaccaccaaacctagtgc 451
Query: 361 aaaatgtgagtgataaagacagaaagcaggaaggacacaaaagctcaagggcaaaaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaaatgtgagtgataaagacagaaagcaggaaggacacaaaagctcaagggcaaaaagaa 391
Query: 421 aagtcaatattagtaaaagaacttaatggtgtctcactccatggttgcaaagaaacttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 390 aagtcaatattagtaaaagaacttaatggtgtctcactccatggttgcaaaaaaacttaa 331
Query: 481 tatgggtatatctgtagtcatgatcatgaagccaaaagagtatgagcaaagtctgtaagc 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 330 tatgggtatatctgtagtcatgatcatgaagcc--aagagtatgagcaaagtctgtaaac 273
Query: 541 atctatcatagaaaaaaaaaggtttcccattctttagaagcaatatttcttgcttaaaat 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atctatcatagaaaaaaaaa-gtttcccattctttagaagcaatatttcttgcttaaaat 214
Query: 601 acaaaatgacttt 613
|||||||||||||
Sbjct: 213 acaaaatgacttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1013
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1003
Effective search space: 607818
Effective search space used: 607818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
