TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGATTCACCAAGCTGTCCCTTAATGCTTCGGGGCAAGCTACGTGAAG
CACGCATTGACATTTCGTATAATAGTAGGCAGAGTCTTGCCTATTAAAAC
TTCAGAAAAGCATGCCCAGAACTGAAAATTTGTCAGAGGCAGCCCGGTGG
GGTAGCAACAGACGGAGAAAAATGTTTTGACATCAGCCATGTGAGAGCAA
GTGGAAGTGTCTCTGTGTTGGGTTAGTTTCACACACAATATCAGGCAGTT
GATTTTAGTAACTCTTAGGATCATACTGGCAGATTTTAGTGCAGTGAATT
GAAATCAAGAAGCAATTATGATTACTACAACCTTAAGGGGACAGTCACAC
GTTTGTGCTTGAGTGTTGAGACTATGGAATGAAATCTGACCCTCTAGATA
TGAGCAAGTATGTTTGAGAATCCTTCACTGAAGGAACTCAAATTCCCCTA
TTGATGAATGCTCAGTGATACTGCCTACAGTGTACCTTTTCTTTTCCCTA
AAGGAACATTTAACCCAGATCCATCATGGACATATAACTCTGTAAGATAA
TATGAATTAATTAATTATGAAAAATGAAATTGAAACATTGCAATCACTCC
AAATATATTTCACATCCAAAGCTCCTATTACAAAATATGCTTGNAAATGT
GTGTGTGTGCAGTTGATTGNCATATAGGGTAAAAACCCACG

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCCTGTCAAAAGGAAATGCAGGAACAAA
GAATGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTGG
TGATCCATCCCACATGCAGACACTAAACCCAGACACTATTGCTGATGCCA
AGAGCTTGCTACAGAAGCCTGGTATAGCTGTCCCCTGAGAGGCTCTATCA
GACACTGACCAATACAGATGCAGATGTATGCAGCCAAACATTGGCCTGAG
TGTGGGGTCTCCAATGGAGGATTTAGAGCAAGAGCTAAAGGAGATGAAGG
GGATTTATAACCCCAAAGGAAGAACAACAATACCAACAAACCAGACCCGC
CCCCAAGGCCCCAGGAACTAAATCACCAACCACAGAGTAGACATCAAGGG
ATCCATGGCTGCACCTGCATATGTGGCAGAGGATGGTCTTATCTGACATC
AGTGGGAGGGGAGGCTCTTGGTCCTGTGGAGGCTCTATGACACAGCATAG
GGGAATGCTAAGGTGCTGTGTGGGAATGGGTAGGCAGGTGGTGGAGCACC
CTCATAAAAGAAAGGGTGGGGGAGGGGATAAAGAAGTTTTTTTNTNTTTT
TTNTTTTTTTTTTTTTTTTTTTTTNNNTTGTTTTTTTTTTTTTTTNNTTT
TTGTGGTTTTTTTGTTTTTTTTTTTTTGTTTGTTGT

Query= MSMg01no513_f19.b1 MSMg01no513_f19.b1 CHROMAT_FILE:
MSMg01no513_f19.b1 PHD_FILE: MSMg01no513_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:50 2005
         (655 letters)



>mm_chr1_69810143_69811197
          Length = 1055

 Score = 1214 bits (628), Expect = 0.0
 Identities = 648/655 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagctgtcccttaatgcttcggggcaagctacgtgaagcacgcattgacatttcgtata 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagctgtcccttaatgcttcagggcaagctacgtgaagcacgcattgacatttcgtata 260

                                                                       
Query: 61  atagtaggcagagtcttgcctattaaaacttcagaaaagcatgcccagaactgaaaattt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 atagtaggcagagtcttgcctattaaaacttcggaaaagcatgcccagaactgaaaattt 320

                                                                       
Query: 121 gtcagaggcagcccggtggggtagcaacagacggagaaaaatgttttgacatcagccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagaggcagcccggtggggtagcaacagacggagaaaaatgttttgacatcagccatg 380

                                                                       
Query: 181 tgagagcaagtggaagtgtctctgtgttgggttagtttcacacacaatatcaggcagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagagcaagtggaagtgtctctgtgttgggttagtttcacacacaatatcaggcagttg 440

                                                                       
Query: 241 attttagtaactcttaggatcatactggcagattttagtgcagtgaattgaaatcaagaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttagtgactcttaggatcatactggcagattttagtgcagtgaattgaaatcaagaa 500

                                                                       
Query: 301 gcaattatgattactacaaccttaaggggacagtcacacgtttgtgcttgagtgttgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaattatgattactacaaccttaaggggacagtcacacgtttgtgcttgagtgttgaga 560

                                                                       
Query: 361 ctatggaatgaaatctgaccctctagatatgagcaagtatgtttgagaatccttcactga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 ctatggaatgaaatctgaccctctagatatgagcaagtatgtttgagaatccatcactga 620

                                                                       
Query: 421 aggaactcaaattcccctattgatgaatgctcagtgatactgcctacagtgtaccttttc 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 aggaactcaaattcccctattgatgaatgctcaatgatactgcctacagtgtaccttttc 680

                                                                       
Query: 481 ttttccctaaaggaacatttaacccagatccatcatggacatataactctgtaagataat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttccctaaaggaacatttaacccagatccatcatggacatataactctgtaagataat 740

                                                                       
Query: 541 atgaattaattaattatgaaaaatgaaattgaaacattgcaatcactccaaatatatttc 600
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 atgaattaattaattatgaaaaatgaaatcgaaacattgcaatcactccaaatatatttc 800

                                                                  
Query: 601 acatccaaagctcctattacaaaatatgcttgnaaatgtgtgtgtgtgcagttga 655
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 801 acatccaaagctcctattacaaaatatgcttgaaaatgtgtgtgtgtgcagttga 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)