Query= MSMg01no513_g12.b1 MSMg01no513_g12.b1 CHROMAT_FILE:
MSMg01no513_g12.b1 PHD_FILE: MSMg01no513_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:54 2005
(597 letters)
>mm_chr1_73353144_73354140
Length = 997
Score = 1056 bits (546), Expect = 0.0
Identities = 575/592 (97%), Gaps = 13/592 (2%)
Strand = Plus / Plus
Query: 5 gaattctgcagtctgcatctgcaagcccagctctcctactgcaagaggagaggcagacaa 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcagcctgcatctgcaagcccagctctcctactgcaagaggagaggcagacaa 264
Query: 65 acttctcggaggttcacaggccagttggcctgctgtcctcagcagtgaacaagagacacg 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 acttctcggaggttcacaggccagttggtctgctgtcctcagcagtgaacaagagacacg 324
Query: 125 catgcaatcgaggtgcaaagtgaggactgacaccccaaattgtcatctgaccatatatgt 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgcaatcaaggtgcaaagtgaggactgacaccccaaattgtcatctgaccatatatgt 384
Query: 185 gccatggcacacatgtgtttgcactcacattcacaagatacatgaacgaacatacatgta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccatggcacacatgtgtttgcactcacattcacaagatacatgaacgaacatacatgta 444
Query: 245 cacacatgtactgtacatgtaccacacacaaacacatttagaagataaatagcagttaag 304
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 c----------tgtacatgtaccacacacaaacacatttagaagataaatagcagttaag 494
Query: 305 aaaaagagctgtggggaaaagtagaatctaactttatggataacaggaatgacatgaacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaaaagagctgtggggaaaagtagaatctaactttatggataacaggaatgacatgaacc 554
Query: 365 agtgtgcaaagctgtgtgcaaatccgggggtgtgcacttaagaagcaacaaaccgatgca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 555 agtgtgcaaagctgtgtgcaaatccgggggtgtgcacttaagaagcaacaaaccgctgca 614
Query: 425 tttgtttaaatactcccttgtccagagccaaaggagagagcaaaaaagagtctgcgagct 484
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 615 tttgtttaaatactcccttgtccagagccaaaggagagagcaaa---gagtctgcgagct 671
Query: 485 tcacttatcccactgagatccctggagactaacccatcagcaggaacttttgagacagtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcacttatcccactgagatccctggagactaacccatcagcaggaacttttgagacagtc 731
Query: 545 ccttagcagagtttgttttactttttactttcagacttgctccaaaagctta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ccttagcagagtttgttttactttttactttcagacttgctccaaaagctta 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_g12.g1 MSMg01no513_g12.g1 CHROMAT_FILE:
MSMg01no513_g12.g1 PHD_FILE: MSMg01no513_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:54 2005
(516 letters)
>mm_chr1_73442956_73443871
Length = 916
Score = 998 bits (516), Expect = 0.0
Identities = 516/516 (100%)
Strand = Plus / Minus
Query: 1 caggtagcatagcagcttggagcataggtacttgtaccatctggttagtaactgccattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 caggtagcatagcagcttggagcataggtacttgtaccatctggttagtaactgccattt 593
Query: 61 gaaggagtttgcaacacagtatgtccaattgcctcactgtacccaggtctatcctagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gaaggagtttgcaacacagtatgtccaattgcctcactgtacccaggtctatcctagttt 533
Query: 121 cctggggcacatacttatcttacaagtggaaatagaacagaaaacatatacataggctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cctggggcacatacttatcttacaagtggaaatagaacagaaaacatatacataggctat 473
Query: 181 tgtgatttgaatgtgaaatgatgcacagatgttggacaactcatccccagtttcgggagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgtgatttgaatgtgaaatgatgcacagatgttggacaactcatccccagtttcgggagc 413
Query: 241 agctcggggcatagtatctgtaccatccggttagaaacttccattcaaagaagtttgcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agctcggggcatagtatctgtaccatccggttagaaacttccattcaaagaagtttgcat 353
Query: 301 catggtgtgaccaggttgtttcaaaggtggagaacttttaagactgtggccttgctagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 catggtgtgaccaggttgtttcaaaggtggagaacttttaagactgtggccttgctagca 293
Query: 361 ggaaagggttgctgggggtgggcctggaaggtgatatctgccttagttccagctaagcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ggaaagggttgctgggggtgggcctggaaggtgatatctgccttagttccagctaagcac 233
Query: 421 tctggtttctggctctacaagatgtgaacaagtgtcttagtcagggtttctattcctaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tctggtttctggctctacaagatgtgaacaagtgtcttagtcagggtttctattcctaca 173
Query: 481 caagacattatgatcaagaagcacgttgggggtggg 516
||||||||||||||||||||||||||||||||||||
Sbjct: 172 caagacattatgatcaagaagcacgttgggggtggg 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
