Query= MSMg01no513_h01.b1 MSMg01no513_h01.b1 CHROMAT_FILE:
MSMg01no513_h01.b1 PHD_FILE: MSMg01no513_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:56 2005
(657 letters)
>mm_chr1_82849935_82850991
Length = 1057
Score = 669 bits (346), Expect = 0.0
Identities = 392/432 (90%), Gaps = 38/432 (8%)
Strand = Plus / Minus
Query: 5 gaattcctctgattgtctattgaggtataaactttacagtgtttttaatcttctacaaac 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaattcctctgactgtctattgaggtataaactttacagtgtttttaatcttctacaaac 335
Query: 65 actctactttcactatgtattcacttaggtttccataacattatatacaaaacagaaagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 actctactttcactatgtattcacttaggtttccataacattatatacaaaacagaaagt 275
Query: 125 aaaatacctaaatctttctctctaaaactaaataaatatacaagtgtaaggtgcatgagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaatacctaaatctttctctctaaaactaaataaatatacaagtgtaaggtgcatgagt 215
Query: 185 gcatgtgtatacaaacacacacacacacacacacacacacacacacatacacacgcgcgc 244
|||||||||||||||||||||||||||||
Sbjct: 214 gcatgtgtatacaaacacacacacacaca------------------------------- 186
Query: 245 gcgcgcgcgcgcgtacacgtttaagtttaaaaaactaaaacaaggagccagggagaaggc 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 -------cgcgcgtacacgtttaagtttaaaaaactaaaacaaggagccagggagaaggc 133
Query: 305 gtggcagttacttattatttacttacttacttacttacttagagaacttactactgtcct 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 132 gtggcagttacttattatttacttacttacttacttacttagagaacttattactgtcct 73
Query: 365 cacagaggacccaggacctattgccagcaccaacacaaagaccacaaagactcacaactg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cacagaggacccaggacctattgccagcaccaacacaaagaccacaaagactcacaactg 13
Query: 425 cctgtaactcaa 436
||||||||||||
Sbjct: 12 cctgtaactcaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_h01.g1 MSMg01no513_h01.g1 CHROMAT_FILE:
MSMg01no513_h01.g1 PHD_FILE: MSMg01no513_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:56 2005
(538 letters)
>mm_chr1_82695533_82696470
Length = 938
Score = 948 bits (490), Expect = 0.0
Identities = 518/538 (96%), Gaps = 17/538 (3%)
Strand = Plus / Plus
Query: 1 actgaggacaacaccggaacactcaatactttgattctctttctcaccctaggcctttac 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 actgaggacaacaccggaacactcaatactttggttctctttctcaccctaggcctttac 260
Query: 61 tacctacctaacagtgacccacccacaacattccccagccagcagcctcactcttctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctacctaacagtgacccacccacaacattccccagccagcagcctcactcttctctc 320
Query: 121 tcctatactgaagccacttactctcatgaataacaccagttgaggatgtaaaacacactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctatactgaagccacttactctcatgaataacaccagttgaggatgtaaaacacactc 380
Query: 181 atacttataaaataaaatcaacaagtcattttttagttaaacacacacacacatgggaaa 240
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 atacttataaaataaaatcaacaagtca-----------------cacacacatgggaaa 423
Query: 241 gaagaggggagattgtttccaatccatatgacagctttcatccagaaatttcaaagcaca 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 424 gaagaggggagattgtttccaatccatatgacagctttcatccaggaatttcaaagcaca 483
Query: 301 gtttcttgaaggttttctgaaaggactaataatacctggtactacactgtgacatctggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtttcttgaaggttttctgaaaggactaataatacctggtactacactgtgacatctggg 543
Query: 361 ctctcttttcagacctcttgcaggctgatccccctttgactcggtatcacggatgtggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctctcttttcagacctcttgcaggctgatccccctttgactcggtatcacggatgtggga 603
Query: 421 aagattcagccaggagactaaacaggactacaacttcctctgtgtctaactgggcaacaa 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 604 aagattcagccaggagactaaacaggattacaacttcctctgtgtctaactgggcaacaa 663
Query: 481 ttccaagcccacatcactaccctgaagtttagcttctctctgctctgttgaattatct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttccaagcccacatcactaccctgaagtttagcttctctctgctctgttgaattatct 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
